plot_gsea {CEMiTool} | R Documentation |
Creates a heatmap with the results of gene set enrichment analysis (GSEA) of co-expression modules
plot_gsea(cem, ...) ## S4 method for signature 'CEMiTool' plot_gsea(cem, pv_cut = 0.05)
cem |
Object of class |
... |
Optional parameters. |
pv_cut |
P-value cut-off. Default |
Object of class CEMiTool
with GSEA plots
# Get example CEMiTool object data(cem) # Get example sample annotation file # Run GSEA on network modules cem <- mod_gsea(cem) # Plot GSEA results cem <- plot_gsea(cem) # Check resulting plot show_plot(cem, "gsea")