get_hubs {CEMiTool}R Documentation

Get hubs

Description

Returns n genes in each module with high connectivity.

Usage

get_hubs(cem, ...)

## S4 method for signature 'CEMiTool'
get_hubs(cem, n = 5, method = "adjacency")

Arguments

cem

Object of class CEMiTool.

...

Optional parameters.

n

Number of hubs to return from each module. If "all", returns all genes in decreasing order of connectivity. Default: 5.

method

Method for hub calculation. Either "adjacency" or "kME". Default: "adjacency"

Value

A list containing hub genes for each module and the value of the calculated method.

Examples

# Get example CEMiTool object
data(cem)
# Get module hubs
hubs <- get_hubs(cem, n=10, "adjacency")


[Package CEMiTool version 1.10.2 Index]