REF3UTR {APAlyzer} | R Documentation |
Build 3'UTR PAS Reference for distal and proximal PAS.
REF3UTR(refUTR)
refUTR |
a dataframe containing 6 colmuns for 3'UTR PASs: 'gene_symbol', 'Chrom', 'Strand', 'Proximal', 'Distal', 'cdsend' |
The function REF3UTR()
returns a genomic ranges of aUTR(pPAS to dPAS)
and cUTR(cdsend to pPAS) regions for each gene
Ruijia Wang
## build Reference ranges for 3'UTR PASs in human extpath = system.file("extdata", "mm9_REF.RData", package="APAlyzer") load(extpath) refUTRraw=refUTRraw[which(refUTRraw$Chrom=='chr19'),] UTRdbraw=REF3UTR(refUTRraw)