Transcript Quantification Import with Automatic Metadata


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Documentation for package ‘tximeta’ version 1.4.5

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addExons Add exons to rowRanges of a transcript-level SummarizedExperiment
addIds Add IDs to rowRanges of a SummarizedExperiment
getTximetaBFC Get or set the directory of the BiocFileCache used by tximeta
linkedTxome Make and load linked transcriptomes ("linkedTxome")
loadLinkedTxome Make and load linked transcriptomes ("linkedTxome")
makeLinkedTxome Make and load linked transcriptomes ("linkedTxome")
setTximetaBFC Get or set the directory of the BiocFileCache used by tximeta
summarizeToGene-method Summarize estimated quantitites to gene-level
tximeta tximeta: Transcript quantification import with automatic metadata