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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
In most cases, you don't need to download the package archive at all.
pasillaBamSubset
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Subset of BAM files from "Pasilla" experiment
Bioconductor version: Release (3.1)
Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.
Author: H. Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("pasillaBamSubset")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
Documentation
| Reference Manual |
Details
| biocViews | DNASeqData, ExperimentData, Genome, RNASeqData |
| Version | 0.6.0 |
| License | LGPL |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | pasilla |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GenomicAlignments, GenomicFeatures, GenomicRanges, Rsamtools, TransView |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pasillaBamSubset_0.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/pasillaBamSubset/ |
| Package Downloads Report | Download Stats |
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