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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("quantsmooth")
In most cases, you don't need to download the package archive at all.
quantsmooth
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Quantile smoothing and genomic visualization of array data
Bioconductor version: Release (3.1)
Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.
Author: Jan Oosting, Paul Eilers, Renee Menezes
Maintainer: Jan Oosting <j.oosting at lumc.nl>
Citation (from within R,
enter citation("quantsmooth")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("quantsmooth")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("quantsmooth")
| R Script | quantsmooth | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Software, Visualization |
| Version | 1.34.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (9 years) |
| License | GPL-2 |
| Depends | R (>= 2.10.0), quantreg, grid |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | beadarraySNP |
| Imports Me | GWASTools, SIM |
| Suggests Me | PREDA |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | quantsmooth_1.34.0.tar.gz |
| Windows Binary | quantsmooth_1.34.0.zip |
| Mac OS X 10.6 (Snow Leopard) | quantsmooth_1.34.0.tgz |
| Mac OS X 10.9 (Mavericks) | quantsmooth_1.34.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/quantsmooth/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/quantsmooth/ |
| Package Downloads Report | Download Stats |
Documentation »
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