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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ampliQueso")
In most cases, you don't need to download the package archive at all.
ampliQueso
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Analysis of amplicon enrichment panels
Bioconductor version: Release (3.1)
The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq
Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>
Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>
Citation (from within R,
enter citation("ampliQueso")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ampliQueso")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ampliQueso")
| R Script | ampliQueso primer | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2 years) |
| License | GPL-2 |
| Depends | R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable |
| Imports | edgeR, DESeq, samr |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ampliQueso_1.6.0.tar.gz |
| Windows Binary | ampliQueso_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ampliQueso_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | ampliQueso_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ampliQueso/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/ampliQueso/ |
| Package Downloads Report | Download Stats |
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