To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

In most cases, you don't need to download the package archive at all.

affypdnn

 

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: Release (3.1)

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affypdnn")

 

PDF R Script affypdnn
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10.5 years)
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
LinkingTo
Suggests affydata, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affypdnn_1.42.0.tar.gz
Windows Binary affypdnn_1.42.0.zip
Mac OS X 10.6 (Snow Leopard) affypdnn_1.42.0.tgz
Mac OS X 10.9 (Mavericks) affypdnn_1.42.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affypdnn/tree/release-3.1
Package Short Url http://bioconductor.org/packages/affypdnn/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center