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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")
In most cases, you don't need to download the package archive at all.
affypdnn
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Probe Dependent Nearest Neighbours (PDNN) for the affy package
Bioconductor version: Release (3.1)
The package contains functions to perform the PDNN method described by Li Zhang et al.
Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).
Maintainer: Laurent Gautier<lgautier at gmail.com>
Citation (from within R,
enter citation("affypdnn")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affypdnn")
| R Script | affypdnn | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 10.5 years) |
| License | LGPL |
| Depends | R (>= 2.13.0), affy(>= 1.5) |
| Imports | |
| LinkingTo | |
| Suggests | affydata, hgu95av2probe |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | affypdnn_1.42.0.tar.gz |
| Windows Binary | affypdnn_1.42.0.zip |
| Mac OS X 10.6 (Snow Leopard) | affypdnn_1.42.0.tgz |
| Mac OS X 10.9 (Mavericks) | affypdnn_1.42.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/affypdnn/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/affypdnn/ |
| Package Downloads Report | Download Stats |
Documentation »
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