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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")
In most cases, you don't need to download the package archive at all.
affxparser
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Affymetrix File Parsing SDK
Bioconductor version: Release (3.1)
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>
Citation (from within R,
enter citation("affxparser")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (10 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.6.0) |
| Imports | |
| LinkingTo | |
| Suggests | R.oo (>= 1.19.0), R.utils (>= 2.0.0), AffymetrixDataTestFiles |
| SystemRequirements | GNU make |
| Enhances | |
| URL | https://github.com/HenrikBengtsson/affxparser |
| BugReports | https://github.com/HenrikBengtsson/affxparser/issues |
| Depends On Me | ITALICS, pdInfoBuilder, rMAT, Starr |
| Imports Me | affyILM, AffyTiling, cn.farms, GeneRegionScan, ITALICS, oligo, rMAT |
| Suggests Me | TIN |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | affxparser_1.40.0.tar.gz |
| Windows Binary | affxparser_1.40.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | affxparser_1.40.0.tgz |
| Mac OS X 10.9 (Mavericks) | affxparser_1.40.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/affxparser/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/affxparser/ |
| Package Downloads Report | Download Stats |
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