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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SeqArray")
In most cases, you don't need to download the package archive at all.
SeqArray
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Big Data Management of Genome-wide Sequencing Variants
Bioconductor version: Release (3.1)
Big data management of genome-wide variants using the CoreArray C++ library: genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the R programming language.
Author: Xiuwen Zheng [aut, cre], Stephanie Gogarten [aut], Cathy Laurie [ctb]
Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>
Citation (from within R,
enter citation("SeqArray")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SeqArray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SeqArray")
| R Script | SeqArray Tutorial | |
| SeqArray-JSM2013.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Genetics, Infrastructure, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (2.5 years) |
| License | GPL-3 |
| Depends | gdsfmt(>= 1.2.2) |
| Imports | methods, Biostrings, GenomicRanges, IRanges, S4Vectors, VariantAnnotation |
| LinkingTo | gdsfmt |
| Suggests | parallel, BiocStyle, BiocGenerics, knitr, RUnit, Rcpp |
| SystemRequirements | |
| Enhances | |
| URL | http://corearray.sourceforge.net/tutorials/SeqArray/ http://github.com/zhengxwen/SeqArray |
| BugReports | http://github.com/zhengxwen/SeqArray/issues |
| Depends On Me | SeqVarTools |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SeqArray_1.8.0.tar.gz |
| Windows Binary | SeqArray_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | SeqArray_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | SeqArray_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/SeqArray/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/SeqArray/ |
| Package Downloads Report | Download Stats |
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