To install this package, start R and enter:
## try http if https is not available source("https://bioconductor.org/biocLite.R") biocLite("RCytoscape")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.1)
Interactvive viewing and exploration of graphs, connecting R to Cytoscape.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at fhcrc.org>
Citation (from within R,
enter citation("RCytoscape")
):
To install this package, start R and enter:
## try http if https is not available source("https://bioconductor.org/biocLite.R") biocLite("RCytoscape")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCytoscape")
R Script | RCytoscape Overview | |
Reference Manual | ||
Text | README | |
Text | NEWS |
biocViews | GraphAndNetwork, Software, ThirdPartyClient, Visualization |
Version | 1.18.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (5 years) |
License | GPL-2 |
Depends | R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4) |
Imports | methods, XMLRPC, BiocGenerics |
LinkingTo | |
Suggests | RUnit |
SystemRequirements | |
Enhances | |
URL | http://rcytoscape.systemsbiology.net |
Depends On Me | |
Imports Me | categoryCompare, NCIgraph, RamiGO |
Suggests Me | clipper, GeneNetworkBuilder, graphite, mmnet, NetPathMiner |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | RCytoscape_1.18.0.tar.gz |
Windows Binary | RCytoscape_1.18.0.zip |
Mac OS X 10.6 (Snow Leopard) | RCytoscape_1.18.0.tgz |
Mac OS X 10.9 (Mavericks) | RCytoscape_1.18.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/RCytoscape/tree/release-3.1 |
Package Short Url | http://bioconductor.org/packages/RCytoscape/ |
Package Downloads Report | Download Stats |
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