To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("GSCA")
In most cases, you don't need to download the package archive at all.
GSCA
|
|
|
|
|
|
|
GSCA: Gene Set Context Analysis
Bioconductor version: Release (3.1)
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
Citation (from within R,
enter citation("GSCA")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("GSCA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSCA")
| R Script | GSCA | |
| Reference Manual |
Details
| biocViews | GUI, GeneExpression, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (1.5 years) |
| License | GPL(>=2) |
| Depends | shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0) |
| Imports | graphics |
| LinkingTo | |
| Suggests | Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GSCA_1.6.0.tar.gz |
| Windows Binary | GSCA_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | GSCA_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | GSCA_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GSCA/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/GSCA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
