- Home
- Bioconductor 3.1
- Software Packages
- DEGreport
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("DEGreport")
In most cases, you don't need to download the package archive at all.
DEGreport
|
|
|
|
|
|
|
Report of DEG analysis
Bioconductor version: Release (3.1)
Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.
Author: Lorena Pantano
Maintainer: Lorena Pantano <lorena.pantano at gmail.com>
Citation (from within R,
enter citation("DEGreport")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("DEGreport")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEGreport")
| R Script | DEGreport | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1 year) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.0), rjags, quantreg |
| Imports | plyr, utils, ggplot2, Nozzle.R1, coda, edgeR |
| LinkingTo | |
| Suggests | knitr, biomaRt, RUnit, BiocStyle, BiocGenerics, BiocParallel |
| SystemRequirements | jags (>= 3.0.0) |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DEGreport_1.2.0.tar.gz |
| Windows Binary | DEGreport_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DEGreport_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | DEGreport_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DEGreport/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/DEGreport/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
