To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: Release (3.1)

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

PDF	R Script	Design Group-Specific FISH Probes
PDF	R Script	Design Group-Specific Primers
PDF	R Script	Design Microarray Probes
PDF	R Script	Design Primers That Yield Group-Specific Signatures
PDF	R Script	Finding Chimeric Sequences
PDF	R Script	Getting Started DECIPHERing
PDF	R Script	The Art of Multiple Sequence Alignment in R
PDF		Reference Manual

biocViews	Alignment, Clustering, DataImport, Genetics, Microarray, QualityControl, Sequencing, Software, Visualization, qPCR
Version	1.14.5
In Bioconductor since	BioC 2.9 (R-2.14) (4 years)
License	GPL-3
Depends	R (>= 2.13.0), Biostrings(>= 2.35.12), RSQLite (>= 1.0.0), stats, parallel
Imports	methods, DBI, S4Vectors, IRanges, XVector
LinkingTo	Biostrings, RSQLite, S4Vectors, IRanges, XVector
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Follow Installation instructions to use this package in your R session.

Package Source	DECIPHER_1.14.5.tar.gz
Windows Binary	DECIPHER_1.14.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DECIPHER_1.14.5.tgz
Mac OS X 10.9 (Mavericks)	DECIPHER_1.14.5.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DECIPHER/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/DECIPHER/
Package Downloads Report	Download Stats