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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ClassifyR")
In most cases, you don't need to download the package archive at all.
ClassifyR
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A framework for two-class classification problems, with applications to differential variability and differential distribution testing.
Bioconductor version: Release (3.1)
The software formalises a framework for classification in R. There are four stages. Data transformation, feature selection, and prediction. The requirements of variable types and names are fixed, but specialised variables for functions can also be provided. The classification framework is wrapped in a driver loop, that reproducibly does a couple of cross-validation schemes. Functions for differential expression, differential variability, and differential distribution are included. Additional functions may be developed by the user, if they have better performing methods.
Author: Dario Strbenac, John Ormerod, Graham Mann, Jean Yang
Maintainer: Dario Strbenac <dario.strbenac at sydney.edu.au>
Citation (from within R,
enter citation("ClassifyR")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ClassifyR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ClassifyR")
| HTML | R Script | An Introduction to ClassifyR |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, Software, Survival |
| Version | 1.2.4 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.0.3), methods, Biobase, BiocParallel |
| Imports | locfit, ROCR, grid |
| LinkingTo | |
| Suggests | limma, edgeR, car, Rmixmod, ggplot2, gridExtra, BiocStyle, pamr, sparsediscrim, PoiClaClu, curatedOvarianData, parathyroidSE, knitr, klaR, gtable, scales, e1071, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ClassifyR_1.2.4.tar.gz |
| Windows Binary | ClassifyR_1.2.4.zip |
| Mac OS X 10.6 (Snow Leopard) | ClassifyR_1.2.4.tgz |
| Mac OS X 10.9 (Mavericks) | ClassifyR_1.2.4.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ClassifyR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/ClassifyR/ |
| Package Downloads Report | Download Stats |
Documentation »
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