To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

In most cases, you don't need to download the package archive at all.

CellNOptR

 

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor version: Release (3.1)

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CellNOptR")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellNOptR")

 

PDF R Script Main vignette:Playing with networks using CellNOptR
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.14.0
In Bioconductor since BioC 2.9 (R-2.14) (4 years)
License GPL-3
Depends R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz, XML
Imports
LinkingTo
Suggests RUnit, BiocGenerics, igraph
SystemRequirements Graphviz version >= 2.2
Enhances
URL
Depends On Me CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me MEIGOR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CellNOptR_1.14.0.tar.gz
Windows Binary CellNOptR_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CellNOptR_1.14.0.tgz
Mac OS X 10.9 (Mavericks) CellNOptR_1.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CellNOptR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/CellNOptR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center