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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pd.2006.07.18.mm8.refseq.promoter")
In most cases, you don't need to download the package archive at all.
pd.2006.07.18.mm8.refseq.promoter
Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
Bioconductor version: 3.0
Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
Author: Martin Aryee
Maintainer: Martin Aryee <aryee at jhu.edu>
Citation (from within R,
enter citation("pd.2006.07.18.mm8.refseq.promoter")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pd.2006.07.18.mm8.refseq.promoter")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData |
| Version | 0.99.3 |
| License | Artistic-2.0 |
| Depends | R (>= 2.11.0), methods, RSQLite (>= 0.7-1), oligoClasses(>= 1.9.30), oligo(>= 1.11.18), DBI |
| Imports | Biostrings(>= 2.13.50), IRanges(>= 1.3.89) |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pd.2006.07.18.mm8.refseq.promoter_0.99.3.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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