To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("specL")

In most cases, you don't need to download the package archive at all.

specL

specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Bioconductor version: 3.0

specL provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.

Author: Christian Trachsel <christian.trachsel at fgcz.uzh.ch>, Christian Panse <cp at fgcz.ethz.ch>, Jonas Grossmann <jg at fgcz.ethz.ch>

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("specL")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("specL")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("specL")

 

PDF R Script specL
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.0.0
In Bioconductor since BioC 3.0 (R-3.1)
License GPL-3
Depends R (>= 3.0.2), methods, DBI, RSQLite, seqinr, protViz (>= 0.2.5)
Imports
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle, BiocParallel
SystemRequirements
Enhances
URL http://www.bioconductor.org/packages/devel/bioc/html/specL.html
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source specL_1.0.0.tar.gz
Windows Binary specL_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) specL_1.0.0.tgz
Mac OS X 10.9 (Mavericks) specL_1.0.0.tgz
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