To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pint")
In most cases, you don't need to download the package archive at all.
pint
Pairwise INTegration of functional genomics data
Bioconductor version: 3.0
Pairwise data integration for functional genomics, including tools for DNA/RNA/miRNA dependency screens.
Author: Olli-Pekka Huovilainen <ohuovila at gmail.com> and Leo Lahti <leo.lahti at iki.fi>
Maintainer: Olli-Pekka Huovilainen <ohuovila at gmail.com>
Citation (from within R,
enter citation("pint")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pint")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pint")
| R Script | pint | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | DifferentialExpression, GeneExpression, Genetics, Microarray, Software, aCGH |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) |
| License | BSD_2_clause + file LICENSE |
| Depends | mvtnorm, methods, graphics, Matrix, dmt |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/antagomir/pint |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pint_1.16.0.tar.gz |
| Windows Binary | pint_1.16.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pint_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | pint_1.16.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
