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parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)

Bioconductor version: 3.0

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou

Maintainer: Bernd Fischer <bernd.fischer at>, Steffen Neumann <sneumann at>, Laurent Gatto <lg390 at>, Qiang Kou <qkou at>

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PDF R Script Accessin raw mass spectrometry and identification data
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 2.0.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends Rcpp (>= 0.10.1), methods, utils
Imports Biobase
LinkingTo Rcpp
Suggests msdata, RUnit, faahKO, mzID, BiocStyle, knitr, BiocGenerics
SystemRequirements GNU make, NetCDF, zlib
Depends On Me MSGFgui, MSnbase, TargetSearch, xcms
Imports Me MSnID, Pbase, RMassBank
Suggests Me qcmetrics, RforProteomics
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Package Source mzR_2.0.0.tar.gz
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