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An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

Bioconductor version: 3.0

Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

Author: Panagiotis Moulos <moulos at>

Maintainer: Panagiotis Moulos <moulos at>

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PDF R Script RNA-Seq data analysis using mulitple statistical algorithms with metaseqR
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, ReportWriting, Software, WorkflowStep
Version 1.4.13
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 3)
Depends R (>= 2.13.0), EDASeq, DESeq, limma, qvalue
Imports edgeR, NOISeq, baySeq, NBPSeq, biomaRt, utils, gplots, corrplot, vsn, brew, rjson, log4r
Suggests BiocGenerics, GenomicRanges, rtracklayer, Rsamtools, MADAM, survcomp, VennDiagram, knitr, zoo, RUnit, BiocInstaller, BSgenome, RSQLite
Enhances parallel, TCC, RMySQL
Depends On Me
Imports Me
Suggests Me
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