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Functions to process LM-PCR reads from 454/Illumina data.

Bioconductor version: 3.0

hiReadsProcessor contains set of functions which allow users to process LM-PCR products sequenced using any platform. Given an excel/txt file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. Genomic products are further processed for QC and abundance quantification.

Author: Nirav V Malani <malnirav at>

Maintainer: Nirav V Malani <malnirav at>

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biocViews Preprocessing, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.0 (R-3.1)
License GPL-3
Depends Biostrings, GenomicAlignments, xlsx, BiocParallel, hiAnnotator, R (>= 3.0)
Imports sonicLength, plyr
Suggests knitr, testthat, BiocGenerics, rSFFreader
SystemRequirements BLAT, JRE, UCSC hg18 in 2bit format for BLAT
Depends On Me
Imports Me
Suggests Me
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Package Source hiReadsProcessor_1.0.0.tar.gz
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