To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

In most cases, you don't need to download the package archive at all.

ReactomePA

Reactome Pathway Analysis

Bioconductor version: 3.0

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ReactomePA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomePA")

PDF	R Script	ReactomePA - an R package for Reactome Pathway Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version	1.10.1
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL-2
Depends
Imports	DOSE, AnnotationDbi, reactome.db, org.Hs.eg.db, igraph, graphite
LinkingTo
Suggests	clusterProfiler, GOSemSim, ChIPseeker, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	ChIPseeker, clusterProfiler, DOSE, GOSemSim
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ReactomePA_1.10.1.tar.gz
Windows Binary	ReactomePA_1.10.1.zip
Mac OS X 10.6 (Snow Leopard)	ReactomePA_1.10.1.tgz
Mac OS X 10.9 (Mavericks)	ReactomePA_1.10.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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