To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CALIB")
In most cases, you don't need to download the package archive at all.
CALIB
Calibration model for estimating absolute expression levels from microarray data
Bioconductor version: 3.0
This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.
Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal
Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>
Citation (from within R,
enter citation("CALIB")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CALIB")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CALIB")
| R Script | CALIB Overview | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) |
| License | LGPL |
| Depends | R (>= 2.10), limma, methods |
| Imports | limma, methods, graphics, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CALIB_1.32.0.tar.gz |
| Windows Binary | CALIB_1.32.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | CALIB_1.32.0.tgz |
| Mac OS X 10.9 (Mavericks) | CALIB_1.32.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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