Functional gene networks derived from biological enrichment analyses


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Documentation for package ‘FGNet’ version 2.0.0

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FGNet-package Functional gene networks derived from biological enrichment analyses
adjMatrix Transforms into group-genes incidence matrices.
FGNet Functional gene networks derived from biological enrichment analyses
functionalNetwork Create and plot the functional gene network.
getResults_david Get results from an analysis with David.
getResults_gtLinker Get results from GeneTerm Linker.
getTerms Get terms in the metagroups/clusters.
intersectionNetwork Metagroup/Cluster intersection network.
plotMetagroupsDistance Plots distances between metagroups.
query_david Query DAVID.
query_gtLinker Query GeneTerm Linker
report_david Generate the Functional Network report for a gene list performing the functional analysis through GeneTerm Linker or DAVID.
report_gtLinker Generate the Functional Network report for a gene list performing the functional analysis through GeneTerm Linker or DAVID.
toMatrix Transforms into group-genes incidence matrices.