To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("keggorthology")

In most cases, you don't need to download the package archive at all.

keggorthology

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see keggorthology.

graph support for KO, KEGG Orthology

Bioconductor version: 2.8

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("keggorthology")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

 

PDF keggorth.pdf
PDF   Reference Manual

Details

biocViews GraphsAndNetworks, Pathways, Software
Version 2.4.0
In Bioconductor since BioC 2.6 (R-2.11) (6 years)
License Artistic-2.0
Depends R (>= 2.5.0), stats, graph, hgu95av2.db
Imports AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
LinkingTo
Suggests RBGL, ALL
SystemRequirements
Enhances
URL
Depends On Me gene2pathway
Imports Me
Suggests Me MLInterfaces
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source keggorthology_2.4.0.tar.gz
Windows Binary keggorthology_2.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/keggorthology/tree/release-2.8
Package Short Url http://bioconductor.org/packages/keggorthology/
Package Downloads Report Download Stats

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