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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChemmineR")
In most cases, you don't need to download the package archive at all.
ChemmineR
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see ChemmineR.
Analysis of Small Molecule and Screening Data
Bioconductor version: 2.8
ChemmineR is an R package for analyzing small molecule and screening data. The new version of the package 'ChemmineR-V2' contains efficient functions and data containers for processing SDFs (structure data files), structural similarity searching, clustering/diversity analyses of compound libraries with a wide spectrum of algorithms. In addition, it offers utilities for managing complex data sets from high-throughput compound bio-assays, and visualization functions for clustering results and chemical structures.
Author: Y. Eddie Cao, Tyler Backman, Yan Wang, Thomas Girke
Maintainer: ChemmineR Team <see at url>
Citation (from within R,
enter citation("ChemmineR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChemmineR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChemmineR")
| ChemmineR.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, CellBasedAssays, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Proteomics, Software, Visualization |
| Version | 2.4.4 |
| In Bioconductor since | BioC 2.3 (R-2.8) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), methods |
| Imports | graphics, methods, stats, RCurl |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://manuals.bioinformatics.ucr.edu/home/chemminer |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChemmineR_2.4.4.tar.gz |
| Windows Binary | ChemmineR_2.4.4.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChemmineR/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/ChemmineR/ |
| Package Downloads Report | Download Stats |
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