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| copa-package | copa - A package to compute 'Cancer Outlier Profile Analysis' |
| copa | Calculate COPA Scores from a Set of Microarrays |
| copaPerm | Measure Significance of COPA by Permutation |
| plotCopa | Plot Gene Pairs fom the Results of Running copa |
| scatterPlotCopa | Create scatterplots of interesting gene pairs |
| summaryCopa | Create Summary Showing Top Gene Pairs |
| tableCopa | Summarize copa results |