Normal Uniform Differential Gene Expression detection


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Documentation for package ‘nudge’ version 1.16.0

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hiv Microarray intensity expression levels for HIV type 1 infection of CD4+
like Microarray intensity expression levels for like-like data
neg.contr Indicator of known truly non differentially expressed genes in the hiv
norm1a Function for normalizing the mean of single replicate log ratios
norm1b Function for normalizing the mean and variance (or just the variance)
norm1c Function for normalizing the mean of average-across-replicates log
norm1d Function for normalizing the mean and variance of
norm2c Function for normalizing the mean of average-across-replicates log
norm2d Function for normalizing the mean and variance of
nudge1 Function for normalizing data, fitting a normal-uniform mixture and
nudge2 Function for normalizing data, fitting a normal-uniform mixture and
pos.contr Indicator of known truly differentially expressed genes in the hiv