goProfiles-package | Performs Gene Ontology based analysis using Functional Profiles. |
as.GOTerms.frame | Functions to transformconvert objects between different types |
as.GOTerms.list | Functions to transformconvert objects between different types |
basicProfile | Builds basic functional profile |
BioCpack2EntrezIDS | Functions to transformconvert objects between different types |
BioCpack2Profiles | Functions to transformconvert objects between different types |
BioCprobes2Entrez | Functions to transformconvert objects between different types |
CD4GOTermsFrame | Entrez identifiers for CD4-TCells example |
CD4GOTermsList | Entrez identifiers for CD4-TCells example |
CD4LLids | Entrez identifiers for CD4-TCells example |
compareGeneLists | Compares two lists of genes by building (expanded) profiles and |
compareGOProfiles | Comparison of lists of genes through their functional profiles |
compareProfilesLists | Compares two of expanded profiles |
compSummary | This function returns a brief summary of the comparison between two |
contractedProfile | Converts an expanded GO profile into a basic (contracted) GO profile |
contractedProfile.default | Converts an expanded GO profile into a basic (contracted) GO profile |
contractedProfile.ExpandedGOProfile | Converts an expanded GO profile into a basic (contracted) GO profile |
diseaseIds | Entrez identifiers for disease-related genes in the OMIM database |
dominantIds | Entrez identifiers for disease-related genes in the OMIM database |
dominantIdsEBI | Entrez identifiers for disease-related genes in the OMIM database |
dominantIdsNCBI | Entrez identifiers for disease-related genes in the OMIM database |
drosophilaIds | Entrez identifiers for genes related with an eye mutation in drosophila |
equivalentGOProfiles | Are two lists of genes equivalent in terms of their Gene Ontology |
equivalentGOProfiles.default | Are two lists of genes equivalent in terms of their Gene Ontology |
equivalentGOProfiles.ExpandedGOProfile | Are two lists of genes equivalent in terms of their Gene Ontology |
equivalentGOProfiles.GOProfileHtest | Are two lists of genes equivalent in terms of their Gene Ontology |
equivalentGOProfiles.list | Are two lists of genes equivalent in terms of their Gene Ontology |
equivSummary | This function returns a brief summary of the equivalence test between |
expandedLevel | Function to create expanded levels which can contain GO Terms at |
expandedProfile | Builds expanded profiles |
expandTerm | Function to create expanded levels which can contain GO Terms at |
fisherGOProfiles | GO Class-by-class Fisher tests in lists of genes characterized by their |
fisherGOProfiles.BasicGOProfile | GO Class-by-class Fisher tests in lists of genes characterized by their |
fisherGOProfiles.ExpandedGOProfile | GO Class-by-class Fisher tests in lists of genes characterized by their |
fisherGOProfiles.matrix | GO Class-by-class Fisher tests in lists of genes characterized by their |
fisherGOProfiles.numeric | GO Class-by-class Fisher tests in lists of genes characterized by their |
fitGOProfile | Does a "sample" GO profile 'pn', observed in a sample of 'n' genes, fit |
getAncestorsLst | Functions to create and manage lists of GO terms associated with a |
getGOLevel | Functions to create and manage lists of GO terms associated with a |
goProfiles | Performs Gene Ontology based analysis using Functional Profiles. |
GOTermsFrame2GOTermsList | Functions to transformconvert objects between different types |
GOTermsList | Functions to create and manage lists of GO terms associated with a |
hugoIds | Entrez Identifiers obtained from the Human Genome Organization |
mergeProfilesLists | Combines two lists of profiles into one |
michaudIds | Entrez identifiers for genes related with an eye mutation in drosophila |
morbidmapIds | Entrez identifiers for disease-related genes in the OMIM database |
ngenes | Returns the number of genes that lead to this GO profile (an object of |
ngenes.BasicGOProfile | Returns the number of genes that lead to this GO profile (an object of |
ngenes.default | Returns the number of genes that lead to this GO profile (an object of |
ngenes.ExpandedGOProfile | Returns the number of genes that lead to this GO profile (an object of |
ngenes.matrix | Returns the number of genes that lead to this GO profile (an object of |
ngenes.numeric | Returns the number of genes that lead to this GO profile (an object of |
omimIds | Entrez identifiers for disease-related genes in the OMIM database |
ostrinIds | Entrez identifiers for genes related with an eye mutation in drosophila |
plotProfiles | Plot functional profiles |
printProfiles | Print functional profiles |
prostateIds | Prostate cancer-related genes |
recessiveIds | Entrez identifiers for disease-related genes in the OMIM database |
recessiveIdsEBI | Entrez identifiers for disease-related genes in the OMIM database |
recessiveIdsNCBI | Entrez identifiers for disease-related genes in the OMIM database |
singh01EntrezIDs | Prostate cancer-related genes |
singh05EntrezIDs | Prostate cancer-related genes |
welsh01EntrezIDs | Prostate cancer-related genes |
welsh05EntrezIDs | Prostate cancer-related genes |