Rsamtools-package |
'samtools' aligned sequence utilities interface |
bamDirname<- |
Views into a set of BAM files |
bamExperiment |
Views into a set of BAM files |
bamFlag |
Parameters for scanning BAM files |
bamFlag<- |
Parameters for scanning BAM files |
bamIndicies |
Views into a set of BAM files |
bamPaths |
Views into a set of BAM files |
bamRanges |
Views into a set of BAM files |
bamRanges<- |
Views into a set of BAM files |
bamReverseComplement |
Parameters for scanning BAM files |
bamReverseComplement<- |
Parameters for scanning BAM files |
bamSamples |
Views into a set of BAM files |
bamSamples<- |
Views into a set of BAM files |
bamSimpleCigar |
Parameters for scanning BAM files |
bamSimpleCigar<- |
Parameters for scanning BAM files |
bamTag |
Parameters for scanning BAM files |
bamTag<- |
Parameters for scanning BAM files |
BamViews |
Views into a set of BAM files |
BamViews-class |
Views into a set of BAM files |
BamViews-method |
Views into a set of BAM files |
bamWhat |
Parameters for scanning BAM files |
bamWhat<- |
Parameters for scanning BAM files |
bamWhich |
Parameters for scanning BAM files |
bamWhich<- |
Parameters for scanning BAM files |
countBam |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
countBam-method |
Views into a set of BAM files |
countBam-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
dim-method |
Views into a set of BAM files |
dimnames-method |
Views into a set of BAM files |
dimnames<--method |
Views into a set of BAM files |
filterBam |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
filterBam-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
indexBam |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
indexBam-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
names-method |
Views into a set of BAM files |
names<--method |
Views into a set of BAM files |
readBamGappedAlignments |
GappedAlignments objects |
readBamGappedAlignments-method |
Views into a set of BAM files |
readBamGappedAlignments-method |
GappedAlignments objects |
readPileup |
Import samtools 'pileup' files. |
readPileup-method |
Import samtools 'pileup' files. |
Rsamtools |
'samtools' aligned sequence utilities interface |
scanBam |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
scanBam-method |
Views into a set of BAM files |
scanBam-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
scanBamFlag |
Parameters for scanning BAM files |
scanBamHeader |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
scanBamHeader-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
ScanBamParam |
Parameters for scanning BAM files |
ScanBamParam-class |
Parameters for scanning BAM files |
ScanBamParam-method |
Parameters for scanning BAM files |
scanBamWhat |
Parameters for scanning BAM files |
show-method |
Views into a set of BAM files |
show-method |
Parameters for scanning BAM files |
sortBam |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
sortBam-method |
Import, count, index, and other operations on 'BAM' (binary alignment) files. |
[-method |
Views into a set of BAM files |