Client-side SOAP access KEGG


[Up] [Top]

Documentation for package ‘KEGGSOAP’ version 1.24.0

Help Pages

bconv Client-side interface to obtain the KEGG ids for external gene IDs
bget Client-side interface to obtain KEGG database entries by a list of
color.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with
get.best.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous
get.best.neighbors.by.gene Client-side interface to obtain the name of genes that are homologous
get.compounds.by.pathway Client-side interface to obtain the KEGG ids for
get.enzymes.by.pathway Client-side interface to obtain the KEGG ids for
get.genes.by.ko Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.genes.by.ko.class Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.genes.by.motifs Client-side interface to obtain the name of genes that contain the
get.genes.by.organism Client-side interface to obtain the KEGG ids for all the genes of a
get.genes.by.pathway Client-side interface to obtain the KEGG ids for
get.ko.by.gene Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.ko.by.ko.class Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.kos.by.pathway Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.motifs.by.gene Client-side interface to obtain the name of genes that are homologous
get.paralogs.by.gene Client-side interface to obtain data for paralogous genes
get.pathways.by.compounds Client-side interface to obtain the KEGG pathway ids
get.pathways.by.enzymes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.genes Client-side interface to obtain the KEGG pathway ids
get.pathways.by.kos Client-side interfaces to obtain the KEGG ko ids for a pathway and vice
get.pathways.by.reactions Client-side interface to obtain the KEGG pathway ids
get.reactions.by.pathway Client-side interface to obtain the KEGG ids for
getBestNeighbors Client-side interface to obtain the name of genes that are homologous
KEGGaction Definitions of objects used by other functions to access KEGG SOAP
KEGGserver Definitions of objects used by other functions to access KEGG SOAP
KEGGxmlns Definitions of objects used by other functions to access KEGG SOAP
list.databases Client-side interface to obtain the names of organisms supported by
list.organisms Client-side interface to obtain the names of organisms supported by
list.pathways Client-side interface to obtain the names of organisms supported by
mark.pathway.by.objects Client-side interface to obtain an url for a KEGG pathway diagram with
search.compounds.by.composition Client-side interface to obtain a list of chemical compounds
search.compounds.by.mass Client-side interface to obtain a list of chemical compounds
search.compounds.by.name Client-side interface to obtain a list of chemical compounds
search.compounds.by.subcomp Client-side interface to obtain a list of chemical compounds
search.glycans.by.composition Client-side interface to obtain a list of chemical glycans
search.glycans.by.kcam Client-side interface to obtain a list of chemical glycans
search.glycans.by.mass Client-side interface to obtain a list of chemical glycans
search.glycans.by.name Client-side interface to obtain a list of chemical glycans