Bayesian Analysis of ChIP-seq Data

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Documentation for package ‘BayesPeak’ version 1.2.3

Help Pages

bayespeak BayesPeak - Bayesian analysis of ChIP-seq data
identify.overfitdiag Overfitting diagnostic functions
plot.bed Plot bed file.
plot.job Plot the called peaks in a job.
plot.overfitdiag Overfitting diagnostic functions
plot.PP Job PP plot.
raw.output Example raw.output object
raw.output.H3K4me3 Example raw.output object from H3K4me3 data
read.bed BayesPeak - Bayesian analysis of ChIP-seq data
region.overfitdiag Overfitting diagnostic functions
summarise.peaks Summarize Peaks
summarize.peaks Summarize Peaks