plw-package | plw |
AffySpikeU95Subset | Spike-in data |
estimateMVbeta | Zero mean multivariate t-dist. with covariate dependent scale. |
estimateSigma | Fit zero mean multivariate t-distribution, known df |
estimateSigmaMV | Fit zero mean multivariate t-distribution |
estimateSigmaMVbeta | Zero mean multivariate t-dist. with covariate dependent scale. |
getKnots | Spline-knots for plw and lmw |
HGU95subset1016 | Spike-in data |
HowToPLW | View HowToPLW |
lmw | Locally Moderated Weighted-t. |
logitTStat | logit-t and t-test by row |
logitTTransform | logit-t and t-test by row |
madByIndex | Computes statistics by index or by row |
meanByIndex | Computes statistics by index or by row |
meanSdByRow | Computes statistics by index or by row |
medianByIndex | Computes statistics by index or by row |
orderStatByIndex | Computes statistics by index or by row |
plotSummaryLog2FC | Return or plots analysis result for top ranking or selected probe sets |
plotSummaryT | Return or plots analysis result for top ranking or selected probe sets |
plw | Probe level Locally moderated Weighted median-t. |
scaleParameterPlot | Scale parameter plotted against mean intensity |
sdByIndex | Computes statistics by index or by row |
spikedProbesU95 | Spike-in data |
studenttTTest | logit-t and t-test by row |
topRankSummary | Return or plots analysis result for top ranking or selected probe sets |
varHistPlot | Variance histogram and density |