snpMatrix

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.6

Implements classes and methods for large-scale SNP association studies

Author: David Clayton <david.clayton at cimr.cam.ac.uk> and Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpMatrix")

To cite this package in a publication, start R and enter:

    citation("snpMatrix")

Documentation

PDF R Script Imputation and meta-analysis
PDF R Script Principal components analysis
PDF Rill
PDF R Script snpMatrix introduction
PDF snpMatrix-paper-HumanHeridity2007.pdf
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews Microarray, SNP, GeneticVariability
Depends R(>= 2.3.0), survival, methods
Imports graphics, grDevices, methods, stats, survival, utils
Suggests hexbin
System Requirements
License GPL-3
URL http://www-gene.cimr.cam.ac.uk/clayton/software/
Depends On Me encoDnaseI, GGdata
Imports Me
Suggests Me crlmm, ind1KG
Version 1.12.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source snpMatrix_1.12.0.tar.gz
Windows Binary snpMatrix_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary snpMatrix_1.12.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center