methVisual

Methods for visualization and statistics on DNA methylation data

Bioconductor version: 2.6

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

Author: A. Zackay, C. Steinhoff

Maintainer: Arie Zackay <zackay at molgen.mpg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("methVisual")

To cite this package in a publication, start R and enter:

    citation("methVisual")

Documentation

PDF R Script Introduction to methVisual
PDF   Reference Manual

Details

biocViews Bioinformatics, DNAMethylation, Clustering, Classification
Depends R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf
Imports Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.1
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source methVisual_1.0.1.tar.gz
Windows Binary methVisual_1.0.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary methVisual_1.0.1.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center