GSRI

Gene Set Regulation Index

Bioconductor version: 2.6

Estimates the number of differentially expressed genes in a gene set with the Gene Set Regulation Index (GSRI).

Author: Kilian Bartholome, Julian Gehring

Maintainer: Julian Gehring <julian.gehring at fdm.uni-freiburg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSRI")

To cite this package in a publication, start R and enter:

    citation("GSRI")

Documentation

PDF R Script Introduction on how to use the Gene Set Regulation Index (GSRI) package to estimate the number of regulated genes in a gene set
PDF   Reference Manual

Details

biocViews Microarray, Transcription, DifferentialExpression, Genetics
Depends R (>= 2.10.0), fdrtool
Imports boot, graphics, stats, utils, genefilter
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source GSRI_1.0.0.tar.gz
Windows Binary GSRI_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSRI_1.0.0.tgz
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