%like% | Pattern matching using wildcards |
doublingTime | Doubling time for genome projects |
genomes | Introduction to the genomes package |
genomes-lines | Add lines to a genomes plot |
genomes-plot | Genome table plots by release date |
genomes-subset | Subset genome tables |
genomes-summary | Genome table summaries |
genomes-update | Genome table updates |
genus | Extract the genus name |
gold | Genomes OnLine Database (GOLD) table |
hmp | Human Microbiome Project (HMP) data |
lenvs | Metagenome sequencing projects at NCBI |
leuks | Eukaryotic genome projects at NCBI |
like | Pattern matching using wildcards |
lines.genomes | Add lines to a genomes plot |
lproks | Microbial genome projects at NCBI |
plot.genomes | Genome table plots by release date |
plotby | Plot groups of genomes by release date |
print.genomes | Print genome tables |
species | Extract the species name |
subset.genomes | Subset genome tables |
summary.genomes | Genome table summaries |
table2 | Format and sort a contigency table |
taxid2names | Retreive taxonomy names from NCBI |
term2neighbor | Retrieve genome neighbors from NCBI |
term2summary | Retrieve genome summaries from NCBI |
top | Find the most common values |
update.genomes | Genome table updates |
virus | Virus genomes at NCBI |
wgs | Bacterial assembly sequences |