Bioconductor has moved to GIT for contributed packages; the subversion logs are no longer active. The following are the git logs.
GIT Logs
This is a list of recent commits to git.bioconductor.org, the devel(development) branch of the Bioconductor GIT repository.
This list is also available as an RSS feed (devel branch), and RSS feed (release branch)
Package: matter
Commit: e56f72cc327446ce750bfa43910284577c7be61e
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 23:00:15 -0400
Commit message:
Commit: e56f72cc327446ce750bfa43910284577c7be61e
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 23:00:15 -0400
Commit message:
v2.5.18
Package: matter
Commit: faab5e97b9ce2a7d71c8be911aa03e7322f4e6a8
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 22:26:33 -0400
Commit message:
Commit: faab5e97b9ce2a7d71c8be911aa03e7322f4e6a8
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 22:26:33 -0400
Commit message:
fix plotly error on non-gridded voxels
Package: matter
Commit: be1e2dc4db28c825c9471df3eef2ca7995097360
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 20:47:20 -0400
Commit message:
Commit: be1e2dc4db28c825c9471df3eef2ca7995097360
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 20:47:20 -0400
Commit message:
update NEWS w/ plot_image 3d support
Package: matter
Commit: 5347ef8429f5290e508dfa043d3526153de4d14e
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 20:42:00 -0400
Commit message:
Commit: 5347ef8429f5290e508dfa043d3526153de4d14e
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 20:42:00 -0400
Commit message:
add 3d support to plot_image()
Package: matter
Commit: e5f8fb00e30f5fe10e060ef28690d86501155bd2
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:34:06 -0400
Commit message:
Commit: e5f8fb00e30f5fe10e060ef28690d86501155bd2
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:34:06 -0400
Commit message:
change parse_formula eval default
Package: matter
Commit: 842476fb74ef07f956b9cedd7b80ef6e3f70852c
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:24:34 -0400
Commit message:
Commit: 842476fb74ef07f956b9cedd7b80ef6e3f70852c
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:24:34 -0400
Commit message:
update NEWS re: parse_formula()
Package: matter
Commit: 55dcb6a99bdc192779b66118e99c11c12dbd2ed0
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:22:45 -0400
Commit message:
Commit: 55dcb6a99bdc192779b66118e99c11c12dbd2ed0
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 18:22:45 -0400
Commit message:
export parse_formula()
Package: matter
Commit: aaf2cb7d77d9bd80f8997742bd5bf41069c9846c
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 12:51:41 -0400
Commit message:
Commit: aaf2cb7d77d9bd80f8997742bd5bf41069c9846c
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 12:51:41 -0400
Commit message:
add vizi_engine()
Package: matter
Commit: 8bec4ea2bdd2853d0b651df5b62ba23e2f00d089
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 23:33:17 -0400
Commit message:
Commit: 8bec4ea2bdd2853d0b651df5b62ba23e2f00d089
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 23:33:17 -0400
Commit message:
cleanup aspect ratio
Package: matter
Commit: 9869773e4d2a682104319be799980471ae257919
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 23:08:54 -0400
Commit message:
Commit: 9869773e4d2a682104319be799980471ae257919
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 23:08:54 -0400
Commit message:
cleanup plot_init and friends; fix free facet axes for plotly
Package: matter
Commit: 81597937e13be62f95ad8c1c07b1d793a82fe6dc
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 22:36:22 -0400
Commit message:
Commit: 81597937e13be62f95ad8c1c07b1d793a82fe6dc
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 22:36:22 -0400
Commit message:
fix aspect ratio for plotly
Package: matter
Commit: 41180b91ca64995e69d9bc17876a6aedc115eac4
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 22:13:42 -0400
Commit message:
Commit: 41180b91ca64995e69d9bc17876a6aedc115eac4
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 22:13:42 -0400
Commit message:
fix facet plot initialization for plotly
Package: matter
Commit: 20c71cc6f40f63c05942f6db6f66f20fc2180132
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 21:49:38 -0400
Commit message:
Commit: 20c71cc6f40f63c05942f6db6f66f20fc2180132
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 21:49:38 -0400
Commit message:
fix reversed axes for plotly
Package: matter
Commit: b1056cd19130802fe9690664294b5d89305778b7
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 21:23:43 -0400
Commit message:
Commit: b1056cd19130802fe9690664294b5d89305778b7
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 21:23:43 -0400
Commit message:
fix bug in flooring x-axis for mark=peak
Package: matter
Commit: 7fa4599b09cb84f81e875cd81802dd567d862c63
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:51:35 -0400
Commit message:
Commit: 7fa4599b09cb84f81e875cd81802dd567d862c63
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:51:35 -0400
Commit message:
fix bugs in pixels channels
Package: matter
Commit: 3210959700cc66cdf819511251df694abc558497
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:37:39 -0400
Commit message:
Commit: 3210959700cc66cdf819511251df694abc558497
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:37:39 -0400
Commit message:
cleanup NAMESPACE
Package: matter
Commit: ac8343d7c579348fe5e1ed727b2ac1ab2caeccee
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:34:39 -0400
Commit message:
Commit: ac8343d7c579348fe5e1ed727b2ac1ab2caeccee
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 20:34:39 -0400
Commit message:
finish up 1st draft plotly support
Package: matter
Commit: 8f87381e3cb1d14234defd949327abc4ec6aa3d7
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 17:32:13 -0400
Commit message:
Commit: 8f87381e3cb1d14234defd949327abc4ec6aa3d7
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-23 17:32:13 -0400
Commit message:
update plotly support for legends
Package: matter
Commit: bdca4767e1dd6aaea46197e87273aca810d22dc5
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-22 17:43:15 -0400
Commit message:
Commit: bdca4767e1dd6aaea46197e87273aca810d22dc5
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-22 17:43:15 -0400
Commit message:
added mark vizi_bars
Package: matter
Commit: ca2e8eeae2f5502ffc1a91aff9cd26e6637eb994
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-21 16:53:08 -0400
Commit message:
Commit: ca2e8eeae2f5502ffc1a91aff9cd26e6637eb994
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-21 16:53:08 -0400
Commit message:
add vizi engine=plotly support
Package: IsoformSwitchAnalyzeR
Commit: bd680e93c87f1778af432ac250d8c4b7e16860b9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 19:22:58 -0700
Commit message:
Commit: bd680e93c87f1778af432ac250d8c4b7e16860b9
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 19:22:58 -0700
Commit message:
Add 2 missing symbols to NAMESPACE Many many more are missing as reported by 'R CMD check' under "Undefined global functions or variables". See for example CHECK result on Bioconductor daily report: https://bioconductor.org/checkResults/3.19/bioc-LATEST/IsoformSwitchAnalyzeR Note that this is unrelated to the move of pairwiseAlignment() to the new pwalign package (previous commit).
Package: SCArray.sat
Commit: e3c68e5ff4ccd85d5fcb786b22924ea8c5ace72e
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2024-04-24 21:27:47 -0500
Commit message:
Commit: e3c68e5ff4ccd85d5fcb786b22924ea8c5ace72e
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2024-04-24 21:27:47 -0500
Commit message:
update for Seurat v5
Package: IsoformSwitchAnalyzeR
Commit: 4c35fe8431c65942402f6494d60a0ca8493c3319
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 19:11:45 -0700
Commit message:
Commit: 4c35fe8431c65942402f6494d60a0ca8493c3319
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 19:11:45 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: SPLINTER
Commit: 2aade96cb831ce64901e9d6bc1a9a79602fc6c3c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 16:05:00 -0700
Commit message:
Commit: 2aade96cb831ce64901e9d6bc1a9a79602fc6c3c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-24 16:05:00 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostrings to pwalign
Package: RTCGAToolbox
Commit: 4420e7ae0852afd3b3722730c11c54f1293e3152
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 19:05:47 -0400
Commit message:
Commit: 4420e7ae0852afd3b3722730c11c54f1293e3152
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 19:05:47 -0400
Commit message:
version bump 2.33.3
Package: RTCGAToolbox
Commit: 185354d884067ec75aaa004b17e93ddea8e254ec
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 19:05:45 -0400
Commit message:
Commit: 185354d884067ec75aaa004b17e93ddea8e254ec
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 19:05:45 -0400
Commit message:
update NEWS file
Package: BiocHubsShiny
Commit: a2353e2b2139bd2ba223422c5e57c851f8dbc1e2
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:56:10 -0400
Commit message:
Commit: a2353e2b2139bd2ba223422c5e57c851f8dbc1e2
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:56:10 -0400
Commit message:
version bump 1.3.1
Package: BiocHubsShiny
Commit: e788b358db99ec4015200ce8afd900f8eec876e4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:56:03 -0400
Commit message:
Commit: e788b358db99ec4015200ce8afd900f8eec876e4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:56:03 -0400
Commit message:
update NEWS file
Package: TENxIO
Commit: 30b79e52886101801e12939ae2261654a9509276
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:51:10 -0400
Commit message:
Commit: 30b79e52886101801e12939ae2261654a9509276
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:51:10 -0400
Commit message:
version bump 1.5.4
Package: TENxIO
Commit: feb03d484960a651d71de8ddce7d327bc5256552
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:51:09 -0400
Commit message:
Commit: feb03d484960a651d71de8ddce7d327bc5256552
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:51:09 -0400
Commit message:
update NEWS file
Package: pwalign
Commit: b6da850610afe7c8201131a3738fabbd0b8277d2
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-22 22:22:07 -0700
Commit message:
Commit: b6da850610afe7c8201131a3738fabbd0b8277d2
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-22 22:22:07 -0700
Commit message:
small tweaks
Package: BiocBaseUtils
Commit: c5278d3d8b6ea63e96ce86b9fcf5588b46fc9b80
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:38:39 -0400
Commit message:
Commit: c5278d3d8b6ea63e96ce86b9fcf5588b46fc9b80
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:38:39 -0400
Commit message:
version bump 1.5.2
Package: BiocBaseUtils
Commit: 75e7a008dad940354493f6bc37d4043c1002c1e9
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:38:31 -0400
Commit message:
Commit: 75e7a008dad940354493f6bc37d4043c1002c1e9
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:38:31 -0400
Commit message:
update NEWS
Package: BiocBaseUtils
Commit: 9d877ee6e7cde9d8c612f83c1651a4bfd62e0ada
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:28:26 -0400
Commit message:
Commit: 9d877ee6e7cde9d8c612f83c1651a4bfd62e0ada
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 17:28:26 -0400
Commit message:
add checkInstalled function
Package: CardinalIO
Commit: 6f5fbb25ec9513600a9d8bc0f150aa8caea545f9
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 17:25:31 -0400
Commit message:
Commit: 6f5fbb25ec9513600a9d8bc0f150aa8caea545f9
Author: Kylie Bemis <k.bemis@northeastern.edu>
Date: 2024-04-24 17:25:31 -0400
Commit message:
v1.1.6 fix error if extraArrays not found
Package: OmnipathR
Commit: 442b9cf43368e72c6915878654bd9b80be2f0141
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:18:30 +0200
Commit message:
Commit: 442b9cf43368e72c6915878654bd9b80be2f0141
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:18:30 +0200
Commit message:
Bump version: 3.11.13 → 3.11.14
Package: OmnipathR
Commit: 6e8f2ce899b9ed5767af40580896f0e7f36a57b8
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:18:25 +0200
Commit message:
Commit: 6e8f2ce899b9ed5767af40580896f0e7f36a57b8
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:18:25 +0200
Commit message:
namespace update
Package: OmnipathR
Commit: e05841c293e7b12956757b52f97605ffcf29dc85
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-16 13:34:04 +0100
Commit message:
Commit: e05841c293e7b12956757b52f97605ffcf29dc85
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-16 13:34:04 +0100
Commit message:
`misc`: some more operator and formatting routines
Package: OmnipathR
Commit: 38893e92422297e74395e0afc27214d4b6a92afc
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-24 02:12:11 +0100
Commit message:
Commit: 38893e92422297e74395e0afc27214d4b6a92afc
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-24 02:12:11 +0100
Commit message:
`for_organism`: fixed: custom mapping erased the result
Package: OmnipathR
Commit: b25bd513fbf8c98d35d3a6908432f0b35729a745
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-19 12:53:53 +0100
Commit message:
Commit: b25bd513fbf8c98d35d3a6908432f0b35729a745
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-19 12:53:53 +0100
Commit message:
`misc`: `maybe_call`, `maybe_get`: clean wrappers around `get` optionally calling a func
Package: OmnipathR
Commit: 8efe882a3bcc58444ad9b6611fcdc172fd36ef7b
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-19 12:52:43 +0100
Commit message:
Commit: 8efe882a3bcc58444ad9b6611fcdc172fd36ef7b
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-19 12:52:43 +0100
Commit message:
read built-in organism support data into pkg env on load
Package: OmnipathR
Commit: 22dafedc289105917a65a1f8f636daa939ca963d
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-18 01:19:19 +0100
Commit message:
Commit: 22dafedc289105917a65a1f8f636daa939ca963d
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-18 01:19:19 +0100
Commit message:
use `read_yaml` instead of `yaml.load_file`
Package: OmnipathR
Commit: e35ff45eab2ef61e4d248ad9e8f4efac776c523e
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:15:32 +0200
Commit message:
Commit: e35ff45eab2ef61e4d248ad9e8f4efac776c523e
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:15:32 +0200
Commit message:
namespace update with `organism_for`
Package: OmnipathR
Commit: 53ef0c5f024b4f7a1149db1792183d74d5529e8c
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-18 01:18:31 +0100
Commit message:
Commit: 53ef0c5f024b4f7a1149db1792183d74d5529e8c
Author: deeenes <turei.denes@gmail.com>
Date: 2024-01-18 01:18:31 +0100
Commit message:
`taxonomy`: `organism_for` - access organism support of resources
Package: OmnipathR
Commit: 6d0a0ced5356b17c8924da652f2a54b1d9cfc3f5
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:08:36 +0200
Commit message:
Commit: 6d0a0ced5356b17c8924da652f2a54b1d9cfc3f5
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:08:36 +0200
Commit message:
`oma`: URL encode ID types for query string
Package: OmnipathR
Commit: 444b78d5f1bc8dcc7c9fd5d8f5ba5696dc20755f
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:08:16 +0200
Commit message:
Commit: 444b78d5f1bc8dcc7c9fd5d8f5ba5696dc20755f
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:08:16 +0200
Commit message:
`oma`: error handling for incorrect ID types in query string (that results less columns than expected)
Package: OmnipathR
Commit: 83f2cf1ab1c1f418ab2df911f6bf023c0b8e2541
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:07:11 +0200
Commit message:
Commit: 83f2cf1ab1c1f418ab2df911f6bf023c0b8e2541
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:07:11 +0200
Commit message:
`oma`: updated reader parameters for new TSV layout
Package: OmnipathR
Commit: 76b66ab93810b1e1a5b262804631f56bcedb5f42
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:06:22 +0200
Commit message:
Commit: 76b66ab93810b1e1a5b262804631f56bcedb5f42
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:06:22 +0200
Commit message:
`oma`: `oma_pairwise_translated`: generic function for all ID types that OMA does not provide
Package: OmnipathR
Commit: 59358703ab6e8308adbe095f1e7cea589f9a428a
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:04:03 +0200
Commit message:
Commit: 59358703ab6e8308adbe095f1e7cea589f9a428a
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:04:03 +0200
Commit message:
`oma`: use `organism_for`
Package: OmnipathR
Commit: 78faa6ba2ebcacb7b6ef8b15b39ab9d74af8d98e
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:02:00 +0200
Commit message:
Commit: 78faa6ba2ebcacb7b6ef8b15b39ab9d74af8d98e
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:02:00 +0200
Commit message:
`oma`: organism config
Package: OmnipathR
Commit: d2d8874aae758294b146f4697f5745534c52b867
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:00:09 +0200
Commit message:
Commit: d2d8874aae758294b146f4697f5745534c52b867
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 23:00:09 +0200
Commit message:
`oma`: updated API URL
Package: OmnipathR
Commit: 29f02990a335082f6e1841a4c8a5e15c26e7f983
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 22:47:05 +0200
Commit message:
Commit: 29f02990a335082f6e1841a4c8a5e15c26e7f983
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 22:47:05 +0200
Commit message:
`oma`: fixed ID type codes
Package: OmnipathR
Commit: ba8fab39f56c1a6c72c9f295b9a8e1b3e9dc79a7
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 22:39:34 +0200
Commit message:
Commit: ba8fab39f56c1a6c72c9f295b9a8e1b3e9dc79a7
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-24 22:39:34 +0200
Commit message:
`oma`: function to list all the OMA organism codes
Package: OmnipathR
Commit: 83cb658b2b7cc120a7933c0b18b406c732b8b728
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-13 11:44:04 +0200
Commit message:
Commit: 83cb658b2b7cc120a7933c0b18b406c732b8b728
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-13 11:44:04 +0200
Commit message:
docs update
Package: OmnipathR
Commit: c379027ed9f494a24e6b3d28b653f1b4b919d4ce
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-13 11:39:12 +0200
Commit message:
Commit: c379027ed9f494a24e6b3d28b653f1b4b919d4ce
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-13 11:39:12 +0200
Commit message:
pkgdown site rebuild
Package: OmnipathR
Commit: 440e99037a97bafbd2562e17b586010acebd82aa
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:49:06 +0200
Commit message:
Commit: 440e99037a97bafbd2562e17b586010acebd82aa
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:49:06 +0200
Commit message:
Bump version: 3.11.12 → 3.11.13
Package: OmnipathR
Commit: b75ed2297e70bbe9a465337470b7a8e10c80a305
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:48:59 +0200
Commit message:
Commit: b75ed2297e70bbe9a465337470b7a8e10c80a305
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:48:59 +0200
Commit message:
docs rebuild
Package: OmnipathR
Commit: de31b50f3dc8741a60c40d27881ade6f2b51a973
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:48:05 +0200
Commit message:
Commit: de31b50f3dc8741a60c40d27881ade6f2b51a973
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:48:05 +0200
Commit message:
function for resource name matching (primary, secondary)
Package: OmnipathR
Commit: e1dbcee625ca0ae4690a0b2bd65e3d4468e8b398
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:47:32 +0200
Commit message:
Commit: e1dbcee625ca0ae4690a0b2bd65e3d4468e8b398
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:47:32 +0200
Commit message:
`only_from`: fixed: do not insert resource prefix in case of zero references
Package: OmnipathR
Commit: 94a40e6b619757d0c6e388ff7f286424a3f1a678
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:46:45 +0200
Commit message:
Commit: 94a40e6b619757d0c6e388ff7f286424a3f1a678
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 03:46:45 +0200
Commit message:
`from_evidences`: function for resource name construction
Package: OmnipathR
Commit: b9a3402285343c1f67f3170fbcc38a0fd126521f
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:21:11 +0200
Commit message:
Commit: b9a3402285343c1f67f3170fbcc38a0fd126521f
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:21:11 +0200
Commit message:
`only_from`: remove records that remained without any evidence after filtering (no idea how this happened before bc I have not encountered such records until now)
Package: OmnipathR
Commit: c61403ac5408fa92715b007374fcfd6d77dd39c8
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:18:04 +0200
Commit message:
Commit: c61403ac5408fa92715b007374fcfd6d77dd39c8
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:18:04 +0200
Commit message:
`exclude` and `.keep` parameters for `only_from` (`filter_evidences`): exclude certain resources; keep and update the "evidences" columns
Package: OmnipathR
Commit: 6ffb09fd26b4631b1598dafa9718e7c99eb35522
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:14:31 +0200
Commit message:
Commit: 6ffb09fd26b4631b1598dafa9718e7c99eb35522
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:14:31 +0200
Commit message:
`evidences_from`: updating "evidences" column in `only_for`
Package: OmnipathR
Commit: f802029810dbd0268be57b44155e2b00fe11cb16
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:12:32 +0200
Commit message:
Commit: f802029810dbd0268be57b44155e2b00fe11cb16
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-12 01:12:32 +0200
Commit message:
`match_evidence`: moved evidence matching into function (for evidence filtering)
Package: OmnipathR
Commit: bec3d0b930056fbcc6f231e26af03954217dc99b
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:53:03 +0200
Commit message:
Commit: bec3d0b930056fbcc6f231e26af03954217dc99b
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:53:03 +0200
Commit message:
Bump version: 3.11.11 → 3.11.12
Package: OmnipathR
Commit: 308e9e9e9519fec433ffb108a56b09a6decd2227
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:52:55 +0200
Commit message:
Commit: 308e9e9e9519fec433ffb108a56b09a6decd2227
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:52:55 +0200
Commit message:
docs+pkgdown rebuild
Package: OmnipathR
Commit: 7189357b363345e36153267b34464551da8c2670
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:52:17 +0200
Commit message:
Commit: 7189357b363345e36153267b34464551da8c2670
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:52:17 +0200
Commit message:
missing import
Package: OmnipathR
Commit: dd31d1a714e2dfad3dcb78034d496d5325487ff3
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:51:53 +0200
Commit message:
Commit: dd31d1a714e2dfad3dcb78034d496d5325487ff3
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:51:53 +0200
Commit message:
`resources_in`: collect resources from a data frame column
Package: OmnipathR
Commit: c7d361426fea6de02c9b48a4d7225f8b6607d899
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:48:36 +0200
Commit message:
Commit: c7d361426fea6de02c9b48a4d7225f8b6607d899
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-10 13:48:36 +0200
Commit message:
`misc`: new helper function to unlist, unique and sort anything
Package: OmnipathR
Commit: 6305befd5585771a594c11e8b6f333cd606a2cca
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 18:14:16 +0200
Commit message:
Commit: 6305befd5585771a594c11e8b6f333cd606a2cca
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 18:14:16 +0200
Commit message:
Bump version: 3.11.10 → 3.11.11
Package: OmnipathR
Commit: 9437af175889ecefdd0ad093917aca664e08e4d9
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 18:08:28 +0200
Commit message:
Commit: 9437af175889ecefdd0ad093917aca664e08e4d9
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 18:08:28 +0200
Commit message:
`omnipath`: added `keep_evidences` to known parameters
Package: OmnipathR
Commit: 0b864ba3b1a603adb84243fd104b9d69de1b8d37
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:51:40 +0200
Commit message:
Commit: 0b864ba3b1a603adb84243fd104b9d69de1b8d37
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:51:40 +0200
Commit message:
`evidences`: new arg `.keep` for `unnest_evidences` & `only_from`: keep the "evidences" column
Package: OmnipathR
Commit: 27c39acf65f8ae79ceb605b513a9a29d0d801cbe
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:49:20 +0200
Commit message:
Commit: 27c39acf65f8ae79ceb605b513a9a29d0d801cbe
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:49:20 +0200
Commit message:
little style corrections
Package: OmnipathR
Commit: 1b222ae2eb5ccced71a6e76f66fe26f5659397c3
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:48:57 +0200
Commit message:
Commit: 1b222ae2eb5ccced71a6e76f66fe26f5659397c3
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 17:48:57 +0200
Commit message:
`check_param/post_download`: `keep_evidences` if the evidences field was requested in the call
Package: OmnipathR
Commit: 71a0e9dac75aef2da17bc60a2e25a58109e4de49
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:57:03 +0200
Commit message:
Commit: 71a0e9dac75aef2da17bc60a2e25a58109e4de49
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:57:03 +0200
Commit message:
pkgdown site: missing fonts
Package: OmnipathR
Commit: b95b7f9f7fdcf8fea5c97343a713dd05a1cd7469
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:54:30 +0200
Commit message:
Commit: b95b7f9f7fdcf8fea5c97343a713dd05a1cd7469
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:54:30 +0200
Commit message:
pkgdown site: missing `font.css`
Package: OmnipathR
Commit: d1302c6913045b2b045abbb04e59a21477e146c0
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:48:53 +0200
Commit message:
Commit: d1302c6913045b2b045abbb04e59a21477e146c0
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-09 15:48:53 +0200
Commit message:
pkgdown site bootstrap version update
Package: OmnipathR
Commit: 5a8e99657c0ff8ab85ff5b213fac960a28728bc0
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-07 18:00:44 +0200
Commit message:
Commit: 5a8e99657c0ff8ab85ff5b213fac960a28728bc0
Author: deeenes <turei.denes@gmail.com>
Date: 2024-04-07 18:00:44 +0200
Commit message:
pkgdown site rebuild
Package: SingleCellMultiModal
Commit: 3156f1ec6757c2e72cb7b8c25b05367acd1799fd
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:31:48 -0400
Commit message:
Commit: 3156f1ec6757c2e72cb7b8c25b05367acd1799fd
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:31:48 -0400
Commit message:
version bump 1.15.1
Package: SingleCellMultiModal
Commit: 47da2f18039f78125d35618885a9eb37542121dd
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:31:44 -0400
Commit message:
Commit: 47da2f18039f78125d35618885a9eb37542121dd
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:31:44 -0400
Commit message:
update NEWS
Package: TCGAutils
Commit: 3c6f903569c91a1231394b863bcdd10185091a8a
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:28:59 -0400
Commit message:
Commit: 3c6f903569c91a1231394b863bcdd10185091a8a
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:28:59 -0400
Commit message:
version bump 1.23.5
Package: TCGAutils
Commit: d40070f096a3607944fe39461231fd25ae99903e
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:28:56 -0400
Commit message:
Commit: d40070f096a3607944fe39461231fd25ae99903e
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:28:56 -0400
Commit message:
update NEWS
Package: RaggedExperiment
Commit: 33a664778997a89406ebd260d3c43503394fe0b4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:08:42 -0400
Commit message:
Commit: 33a664778997a89406ebd260d3c43503394fe0b4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:08:42 -0400
Commit message:
version bump 1.27.2
Package: RaggedExperiment
Commit: 32cc4590a3555cc026c371b3e0bbcb34984bec2d
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:08:37 -0400
Commit message:
Commit: 32cc4590a3555cc026c371b3e0bbcb34984bec2d
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 16:08:37 -0400
Commit message:
update NEWS file
Package: PureCN
Commit: e2de63642828324c6261b798de89e813e91f2e08
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:17:15 -0400
Commit message:
Commit: e2de63642828324c6261b798de89e813e91f2e08
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:17:15 -0400
Commit message:
Version bump.
Package: PureCN
Commit: 0edcd4dda56a384400e656a33e7916ee792d0e2a
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:15:01 -0400
Commit message:
Commit: 0edcd4dda56a384400e656a33e7916ee792d0e2a
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:15:01 -0400
Commit message:
Merge pull request #366 from lima1/issue_40 Issue 40
Package: PureCN
Commit: 354413cc04eac7854b4ad4e8da0682203f6ce9aa
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:13:23 -0400
Commit message:
Commit: 354413cc04eac7854b4ad4e8da0682203f6ce9aa
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 15:13:23 -0400
Commit message:
Merge pull request #365 from lima1/issue_363 Issue 363
Package: PureCN
Commit: 37f0097a34030cd46a9c98d484a9700d57ce4a24
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 14:47:05 -0400
Commit message:
Commit: 37f0097a34030cd46a9c98d484a9700d57ce4a24
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 14:47:05 -0400
Commit message:
Attempt in fixing #363.
Package: PureCN
Commit: 822e4df325df61cf5bdd67478e660455ab385fa1
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 14:43:56 -0400
Commit message:
Commit: 822e4df325df61cf5bdd67478e660455ab385fa1
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-24 14:43:56 -0400
Commit message:
Attempt in fixing #363.
Package: PureCN
Commit: 5ec2226363f7e29b5886a87a5a32deb2a51fba88
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-01 11:39:12 -0400
Commit message:
Commit: 5ec2226363f7e29b5886a87a5a32deb2a51fba88
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-04-01 11:39:12 -0400
Commit message:
Changed default of min.ratio to cleaner -8.
Package: PureCN
Commit: daf175bf1f3df9f06274d98a9e8c9e7b627826be
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-03-31 17:02:36 -0400
Commit message:
Commit: daf175bf1f3df9f06274d98a9e8c9e7b627826be
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-03-31 17:02:36 -0400
Commit message:
Fix broken test.
Package: PureCN
Commit: 5169999d03b10c9715039bd842b42bea73cef526
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-03-31 16:38:37 -0400
Commit message:
Commit: 5169999d03b10c9715039bd842b42bea73cef526
Author: Markus Riester <markus.riester@novartis.com>
Date: 2024-03-31 16:38:37 -0400
Commit message:
Attempt in a resolution for #40.
Package: cBioPortalData
Commit: 5838dd37d0dbd87f933ff2d5254aa4a9718a92ae
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:58:07 -0400
Commit message:
Commit: 5838dd37d0dbd87f933ff2d5254aa4a9718a92ae
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:58:07 -0400
Commit message:
version bump 2.15.5
Package: cBioPortalData
Commit: 18136ee61e72096a277215df73325addbcac712b
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:58:02 -0400
Commit message:
Commit: 18136ee61e72096a277215df73325addbcac712b
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:58:02 -0400
Commit message:
update NEWS file
Package: MSstatsPTM
Commit: 804a856c6b5acac4db6842beb7826462704ee0fc
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:57:43 -0400
Commit message:
Commit: 804a856c6b5acac4db6842beb7826462704ee0fc
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:57:43 -0400
Commit message:
version bump
Package: MSstatsPTM
Commit: 03c79cc7c829366fea418a672a47dd59b2ba9c37
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-04-17 16:05:52 -0400
Commit message:
Commit: 03c79cc7c829366fea418a672a47dd59b2ba9c37
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-04-17 16:05:52 -0400
Commit message:
version bump
Package: MSstatsPTM
Commit: 529334959fb0e8f7039c322f9d7d4bac7480a248
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-04-17 16:04:14 -0400
Commit message:
Commit: 529334959fb0e8f7039c322f9d7d4bac7480a248
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-04-17 16:04:14 -0400
Commit message:
feat(metamorpheus): Add global profiling feature to Metamorpheus PTM converter (#87) * feat(metamorpheus): Add global profiling feature to Metamorpheus PTM converter * add news on metamorpheus converter * added more unit tests
Package: MSstatsPTM
Commit: ad8cc8095d4702df3b844f983e171d44402a60a2
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-03-04 09:58:50 -0500
Commit message:
Commit: ad8cc8095d4702df3b844f983e171d44402a60a2
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-03-04 09:58:50 -0500
Commit message:
version bump
Package: MSstatsPTM
Commit: 7ff61cd341c98863345a84babd7f7cc6ca00c5c6
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-03-04 09:58:20 -0500
Commit message:
Commit: 7ff61cd341c98863345a84babd7f7cc6ca00c5c6
Author: tonywu1999 <ant.wu@northeastern.edu>
Date: 2024-03-04 09:58:20 -0500
Commit message:
feat(metamorpheus-converter): Create converter for Metamorpheus to MSstatsPTM format (#86) * feat(metamorpheus-converter): Create converter for Metamorpheus to MSstatsPTM format * fix: For ptm_input, filter out rows without targeted ptm
Package: MSstatsPTM
Commit: fc90cfadb4170f7433a6297ea7867862154efdc1
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-14 15:00:51 -0500
Commit message:
Commit: fc90cfadb4170f7433a6297ea7867862154efdc1
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-14 15:00:51 -0500
Commit message:
Merge pull request #85 from Vitek-Lab/devel bug fix
Package: MSstatsPTM
Commit: 81da1b02f773a3b2b471c874bb53c81c80ea0ba7
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-02-14 14:59:13 -0500
Commit message:
Commit: 81da1b02f773a3b2b471c874bb53c81c80ea0ba7
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-02-14 14:59:13 -0500
Commit message:
bug fix
Package: MSstatsPTM
Commit: 1c871e05ea28a844358775c3caca1428ccd48868
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-13 09:05:17 -0500
Commit message:
Commit: 1c871e05ea28a844358775c3caca1428ccd48868
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-13 09:05:17 -0500
Commit message:
Merge branch 'RELEASE_3_18' into master
Package: MSstatsPTM
Commit: 8378cced13cbb48c9e24d2535dbbb580c0984cc6
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-13 09:04:41 -0500
Commit message:
Commit: 8378cced13cbb48c9e24d2535dbbb580c0984cc6
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-13 09:04:41 -0500
Commit message:
Merge pull request #83 from Vitek-Lab/devel Devel
Package: MSstatsPTM
Commit: 3e423f0dec1439aa86cd25b12e911d1eecac1653
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 11:26:17 +0200
Commit message:
Commit: 3e423f0dec1439aa86cd25b12e911d1eecac1653
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 11:26:17 +0200
Commit message:
version bump
Package: MSstatsPTM
Commit: d6277b3dd9a233620169602bc97b118812faaeed
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 11:26:00 +0200
Commit message:
Commit: d6277b3dd9a233620169602bc97b118812faaeed
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 11:26:00 +0200
Commit message:
version bump
Package: MSstatsPTM
Commit: a89750191ab0d44904be3170d8207dfddfcfc1ed
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 04:25:01 -0500
Commit message:
Commit: a89750191ab0d44904be3170d8207dfddfcfc1ed
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-02-04 04:25:01 -0500
Commit message:
Merge pull request #82 from Vitek-Lab/master PD bug fix
Package: MSstatsPTM
Commit: f65db0aaf3cf59587a5105fa66fab2733b63a7e2
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-01-31 14:43:13 -0500
Commit message:
Commit: f65db0aaf3cf59587a5105fa66fab2733b63a7e2
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-01-31 14:43:13 -0500
Commit message:
remove model file
Package: MSstatsPTM
Commit: 9678ad1b046ea04b305dbe06e0182f63e0deece6
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-01-31 14:40:58 -0500
Commit message:
Commit: 9678ad1b046ea04b305dbe06e0182f63e0deece6
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-01-31 14:40:58 -0500
Commit message:
version bump
Package: MSstatsPTM
Commit: b16eea1632d4ad0966b09894d6c937c15da67d11
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-01-31 14:40:34 -0500
Commit message:
Commit: b16eea1632d4ad0966b09894d6c937c15da67d11
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-01-31 14:40:34 -0500
Commit message:
Merge pull request #80 from Vitek-Lab/master skyline bug
Package: cBioPortalData
Commit: a6fba305b31b5c86b8ed728672a37ec762ce37e2
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:56:28 -0400
Commit message:
Commit: a6fba305b31b5c86b8ed728672a37ec762ce37e2
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:56:28 -0400
Commit message:
version bump 2.15.4
Package: cBioPortalData
Commit: 01fe589283a614b1e538e771a7addfa763455732
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:56:18 -0400
Commit message:
Commit: 01fe589283a614b1e538e771a7addfa763455732
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:56:18 -0400
Commit message:
use package name in CITATION
Package: cBioPortalData
Commit: 1356109249899cbabdc0c5812bdc92745e3b14cb
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:52:32 -0400
Commit message:
Commit: 1356109249899cbabdc0c5812bdc92745e3b14cb
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:52:32 -0400
Commit message:
update roxygen
Package: cBioPortalData
Commit: f4b327179a11761637ef5d09fd65c5c20f3ac2cc
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:52:22 -0400
Commit message:
Commit: f4b327179a11761637ef5d09fd65c5c20f3ac2cc
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:52:22 -0400
Commit message:
avoid partial arg match warning
Package: MultiAssayExperiment
Commit: 8ed6e47ba6602df656fe8084a45df41f111863eb
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:41:54 -0400
Commit message:
Commit: 8ed6e47ba6602df656fe8084a45df41f111863eb
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:41:54 -0400
Commit message:
version bump 1.29.2
Package: MultiAssayExperiment
Commit: cbec5787d0d1a52357b1dcde71c80806755b9bf4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:40:17 -0400
Commit message:
Commit: cbec5787d0d1a52357b1dcde71c80806755b9bf4
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:40:17 -0400
Commit message:
update NEWS file
Package: MultiAssayExperiment
Commit: dbe61a1dcb972be3e4c81b0efa6e16d68785a098
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:40:02 -0400
Commit message:
Commit: dbe61a1dcb972be3e4c81b0efa6e16d68785a098
Author: LiNk-NY <marcel.ramosperez@roswellpark.org>
Date: 2024-04-24 15:40:02 -0400
Commit message:
update formatting in inst/REFERENCES.bib
Package: MSstatsTMT
Commit: 5c8b9e79093e9555a191b34505b4b2e7be390de2
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:32:13 -0400
Commit message:
Commit: 5c8b9e79093e9555a191b34505b4b2e7be390de2
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:32:13 -0400
Commit message:
fix news file
Package: MSstatsTMT
Commit: cb5070d5b21b1af43301e5b4cf689a8f5344a2ef
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:30:56 -0400
Commit message:
Commit: cb5070d5b21b1af43301e5b4cf689a8f5344a2ef
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-24 15:30:56 -0400
Commit message:
removed dup news file
Package: MSstatsTMT
Commit: d811d000e740cc472e9473cbfbf0eee9b549af24
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-04-24 15:30:21 -0400
Commit message:
Commit: d811d000e740cc472e9473cbfbf0eee9b549af24
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-04-24 15:30:21 -0400
Commit message:
Delete inst/NEWS.rd
Package: rtracklayer
Commit: 843c950c4f6c1ae09d022dbb16e0b488bc8f37c7
Author: Michael Lawrence <michafla@gene.com>
Date: 2024-04-24 11:45:34 -0700
Commit message:
Commit: 843c950c4f6c1ae09d022dbb16e0b488bc8f37c7
Author: Michael Lawrence <michafla@gene.com>
Date: 2024-04-24 11:45:34 -0700
Commit message:
Merge pull request #118 from hpages/master Fix linking error on Windows/Rtools44
Package: rtracklayer
Commit: f70856a67e3e77ce2ee5189f76b59b922f58cd6b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-21 10:45:40 -0700
Commit message:
Commit: f70856a67e3e77ce2ee5189f76b59b922f58cd6b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-21 10:45:40 -0700
Commit message:
Fix linking error on Windows/Rtools44
Package: extraChIPs
Commit: b317aa9500d182d00cf7acca7889e72b0d5049f6
Author: Stevie Ped <stephen.pederson.au@gmail.com>
Date: 2024-04-25 02:30:06 +0930
Commit message:
Commit: b317aa9500d182d00cf7acca7889e72b0d5049f6
Author: Stevie Ped <stephen.pederson.au@gmail.com>
Date: 2024-04-25 02:30:06 +0930
Commit message:
Bugfix in mergeByHMP
Package: epiregulon
Commit: e8b6e4e55b75c34ee4ca4eca5de9f2bc9f4987b4
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 09:34:49 -0700
Commit message:
Commit: e8b6e4e55b75c34ee4ca4eca5de9f2bc9f4987b4
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 09:34:49 -0700
Commit message:
0.99.21
Package: epiregulon.extra
Commit: 1aa00b24a4c3334fe2bcddfcdb56b40a4179c7f4
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:31:07 -0700
Commit message:
Commit: 1aa00b24a4c3334fe2bcddfcdb56b40a4179c7f4
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:31:07 -0700
Commit message:
0.99.17
Package: epiregulon.extra
Commit: c46c43cdfcda64af94305b0d6b41ae0498b27ad6
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:26:01 -0700
Commit message:
Commit: c46c43cdfcda64af94305b0d6b41ae0498b27ad6
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:26:01 -0700
Commit message:
0.99.17
Package: epiregulon.extra
Commit: 049e0d0d2299c7e5d26d459944c635cdae6688e1
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:25:15 -0700
Commit message:
Commit: 049e0d0d2299c7e5d26d459944c635cdae6688e1
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:25:15 -0700
Commit message:
update news
Package: epiregulon.extra
Commit: 77bedde1dcdc7d9d4bdc81475490c002a43f488e
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:19:05 -0700
Commit message:
Commit: 77bedde1dcdc7d9d4bdc81475490c002a43f488e
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:19:05 -0700
Commit message:
0.99.16
Package: epiregulon.extra
Commit: 556bc30332cf28683570092d4c15ef5598117cfd
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:18:37 -0700
Commit message:
Commit: 556bc30332cf28683570092d4c15ef5598117cfd
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-24 08:18:37 -0700
Commit message:
BioC second view update news and NAMESPACE
Package: epiregulon.extra
Commit: bbee48b9bd542cf4a238df3a6e3d30fb4fc201ef
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 08:28:14 -0700
Commit message:
Commit: bbee48b9bd542cf4a238df3a6e3d30fb4fc201ef
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 08:28:14 -0700
Commit message:
v0.99.16
Package: epiregulon.extra
Commit: de31ff1b88ab37d559a63129ac610275b242c0f5
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:42:04 -0700
Commit message:
Commit: de31ff1b88ab37d559a63129ac610275b242c0f5
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:42:04 -0700
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/epiregulon.extra into devel
Package: epiregulon.extra
Commit: fef941f9ce43fd014e29f0c837bf888d940e2bca
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:41:10 -0700
Commit message:
Commit: fef941f9ce43fd014e29f0c837bf888d940e2bca
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:41:10 -0700
Commit message:
v0.99.15
Package: epiregulon.extra
Commit: f74a20256bbb431002f81a489b9d80437533d4ec
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:40:42 -0700
Commit message:
Commit: f74a20256bbb431002f81a489b9d80437533d4ec
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-24 07:40:42 -0700
Commit message:
NEWS update
Package: autonomics
Commit: 092dbef5a333a39e16aa6457bde4d172d795dd79
Author: Aditya Bhagwat <aditya.bhagwat@uni-marburg.de>
Date: 2024-04-24 16:40:12 +0200
Commit message:
Commit: 092dbef5a333a39e16aa6457bde4d172d795dd79
Author: Aditya Bhagwat <aditya.bhagwat@uni-marburg.de>
Date: 2024-04-24 16:40:12 +0200
Commit message:
1.11.108 : create `fix_xlgenes`
Package: ENmix
Commit: b71062e45764d4bccc297ce7f2a53f4f9762c082
Author: Zongli Xu <xuz@niehs.nih.gov>
Date: 2024-04-24 10:40:27 -0400
Commit message:
Commit: b71062e45764d4bccc297ce7f2a53f4f9762c082
Author: Zongli Xu <xuz@niehs.nih.gov>
Date: 2024-04-24 10:40:27 -0400
Commit message:
bugfix Signed-off-by: Zongli Xu <xuz@niehs.nih.gov>
Package: zitools
Commit: 5f45d497ccbf72259c0d37c386d7035b17000471
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 16:21:43 +0200
Commit message:
Commit: 5f45d497ccbf72259c0d37c386d7035b17000471
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 16:21:43 +0200
Commit message:
Merge pull request #2 from kreutz-lab/devel Devel
Package: zitools
Commit: 33975f77ad062af7941c0154dcc9282cad181eb1
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 16:19:37 +0200
Commit message:
Commit: 33975f77ad062af7941c0154dcc9282cad181eb1
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 16:19:37 +0200
Commit message:
Merge branch 'main' into devel
Package: zitools
Commit: d3dcc636f73541f8a90d527f34be3a832fb358bc
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 16:13:37 +0200
Commit message:
Commit: d3dcc636f73541f8a90d527f34be3a832fb358bc
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 16:13:37 +0200
Commit message:
Merge branch 'devel' of https://github.com/kreutz-lab/zitools into devel
Package: zitools
Commit: 0375ab1fb80a57300ceb18b54d6ab9327c9618f3
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 16:13:20 +0200
Commit message:
Commit: 0375ab1fb80a57300ceb18b54d6ab9327c9618f3
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 16:13:20 +0200
Commit message:
Updated README.md
Package: MungeSumstats
Commit: 16afb54bd60847003b45235287999200b40a272d
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2024-04-24 15:17:29 +0100
Commit message:
Commit: 16afb54bd60847003b45235287999200b40a272d
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2024-04-24 15:17:29 +0100
Commit message:
enable local chain files
Package: mia
Commit: 9c1902ee4c712f6a136ed41ff72bc89687af39a1
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2024-04-24 16:46:20 +0300
Commit message:
Commit: 9c1902ee4c712f6a136ed41ff72bc89687af39a1
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2024-04-24 16:46:20 +0300
Commit message:
importMetaphlan: bugfixes (#530)
Package: mia
Commit: 88947bba18ceba799589faa3d9870b7675ca952d
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-24 16:20:40 +0300
Commit message:
Commit: 88947bba18ceba799589faa3d9870b7675ca952d
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-24 16:20:40 +0300
Commit message:
Deprecate functions *_join (#515)
Package: mia
Commit: 1ab099804e92c7a41f8dfabc7c2f2a4c4cbbe2c9
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-24 15:59:25 +0300
Commit message:
Commit: 1ab099804e92c7a41f8dfabc7c2f2a4c4cbbe2c9
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-24 15:59:25 +0300
Commit message:
correct typo 'importBiom' to 'importBIOM' (#525) Co-authored-by: Leo Lahti <leo.lahti@iki.fi>
Package: mia
Commit: 1b84bc52016b62041c275a24127d78219fc73a30
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-19 16:36:57 +0300
Commit message:
Commit: 1b84bc52016b62041c275a24127d78219fc73a30
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-19 16:36:57 +0300
Commit message:
deprecate subset* functions (#518)
Package: mia
Commit: 58cc49bd118ff2b75d12b2eca006cfd48c307933
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2024-04-18 10:30:43 +0300
Commit message:
Commit: 58cc49bd118ff2b75d12b2eca006cfd48c307933
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2024-04-18 10:30:43 +0300
Commit message:
Revert "Issue 334 estimate diversity" (#516)
Package: mia
Commit: c96a4e5d31362e3aa8abbb359110f7f099cff7dd
Author: nmdegunst <74536546+Insaynoah@users.noreply.github.com>
Date: 2024-04-17 10:19:22 +0300
Commit message:
Commit: c96a4e5d31362e3aa8abbb359110f7f099cff7dd
Author: nmdegunst <74536546+Insaynoah@users.noreply.github.com>
Date: 2024-04-17 10:19:22 +0300
Commit message:
Issue 334 estimate diversity (#514)
Package: mia
Commit: f0d3436b7df37cddd1193967644ede26cdd19f76
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-16 15:47:51 +0300
Commit message:
Commit: f0d3436b7df37cddd1193967644ede26cdd19f76
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-16 15:47:51 +0300
Commit message:
Explain difference between phylogenetic and hierarchy trees (#510)
Package: mia
Commit: b7dd1c27318731d5cc5042695d35ae657816d086
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-15 15:05:40 +0300
Commit message:
Commit: b7dd1c27318731d5cc5042695d35ae657816d086
Author: Théotime Pralas <151254073+thpralas@users.noreply.github.com>
Date: 2024-04-15 15:05:40 +0300
Commit message:
rename importers to standardize "import" terminology (#505) Co-authored-by: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Package: epiregulon
Commit: be942f92d7e1e446f0f09c56d8aa3faf86d1b637
Author: TomVuod <tomwlo@gmail.com>
Date: 2024-04-24 06:31:01 -0700
Commit message:
Commit: be942f92d7e1e446f0f09c56d8aa3faf86d1b637
Author: TomVuod <tomwlo@gmail.com>
Date: 2024-04-24 06:31:01 -0700
Commit message:
news update
Package: epiregulon
Commit: bcef194ccc0d242cf4fc9e62aa4d051eca2cc58e
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-22 21:25:50 -0700
Commit message:
Commit: bcef194ccc0d242cf4fc9e62aa4d051eca2cc58e
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-22 21:25:50 -0700
Commit message:
edit vignette
Package: scaeData
Commit: 064c3c76baa5da2f4b9843386ea6ec4ab5f43bcf
Author: Ahmad Al Ajami <ahmad.alajami@kgu.de>
Date: 2024-04-24 15:08:00 +0200
Commit message:
Commit: 064c3c76baa5da2f4b9843386ea6ec4ab5f43bcf
Author: Ahmad Al Ajami <ahmad.alajami@kgu.de>
Date: 2024-04-24 15:08:00 +0200
Commit message:
fixed a typo in the lookup table of pbmc 5k dataset; version bump triggered
Package: methodical
Commit: 5e6d3a23270abdfbb9a725184713e5b39d7dfae7
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-24 14:44:31 +0200
Commit message:
Commit: 5e6d3a23270abdfbb9a725184713e5b39d7dfae7
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-24 14:44:31 +0200
Commit message:
Bumped version
Package: atena
Commit: e814a13d541840de228930a6dcdb8cd154cced5e
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-24 13:54:58 +0200
Commit message:
Commit: e814a13d541840de228930a6dcdb8cd154cced5e
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-24 13:54:58 +0200
Commit message:
Reduced execution time in some of the examples
Package: zitools
Commit: 859a17096bdc3bcecef4ebe296b4a845ae6ffc32
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 13:25:37 +0200
Commit message:
Commit: 859a17096bdc3bcecef4ebe296b4a845ae6ffc32
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 13:25:37 +0200
Commit message:
Update DESCRIPTION
Package: zitools
Commit: 02a2cc453a567b253307b95d25c4014c0cbb0b03
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 13:21:27 +0200
Commit message:
Commit: 02a2cc453a567b253307b95d25c4014c0cbb0b03
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-24 13:21:27 +0200
Commit message:
Merge pull request #1 from kreutz-lab/devel Devel
Package: zitools
Commit: 0d3ac13d07890743ee28a81a1f6a56e6f68ee675
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 12:56:47 +0200
Commit message:
Commit: 0d3ac13d07890743ee28a81a1f6a56e6f68ee675
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 12:56:47 +0200
Commit message:
update DESCRIPTION and Version Number
Package: MungeSumstats
Commit: bf83eaacc908c0913dbb945cfc42055156d11206
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2024-04-24 11:21:11 +0100
Commit message:
Commit: bf83eaacc908c0913dbb945cfc42055156d11206
Author: Al-Murphy <alanmurph94@hotmail.com>
Date: 2024-04-24 11:21:11 +0100
Commit message:
drop miss dat select cols
Package: MungeSumstats
Commit: 588a898fd64cf3e3ae4134c7729667c960038b25
Author: Alan Murphy <62257358+Al-Murphy@users.noreply.github.com>
Date: 2024-04-24 10:19:49 +0100
Commit message:
Commit: 588a898fd64cf3e3ae4134c7729667c960038b25
Author: Alan Murphy <62257358+Al-Murphy@users.noreply.github.com>
Date: 2024-04-24 10:19:49 +0100
Commit message:
Merge pull request #182 from rmgpanw/dev_check_missing_data_cols add `drop_na_cols` parameter to `format_sumstats()`
Package: MungeSumstats
Commit: b88a70dcf44378c267972c238bf63f1c9012e18e
Author: rmgpanw <alasdair.warwick06@gmail.com>
Date: 2024-04-22 22:47:32 +0100
Commit message:
Commit: b88a70dcf44378c267972c238bf63f1c9012e18e
Author: rmgpanw <alasdair.warwick06@gmail.com>
Date: 2024-04-22 22:47:32 +0100
Commit message:
add `drop_na_cols` parameter to `format_sumstats()` and `check_miss_data()`
Package: tripr
Commit: df7ee2395eb83e3ff432372a7f20769adaafb1bc
Author: KonstantinosKardamiliotis <k.kardamiliotis@gmail.com>
Date: 2024-04-24 11:38:57 +0300
Commit message:
Commit: df7ee2395eb83e3ff432372a7f20769adaafb1bc
Author: KonstantinosKardamiliotis <k.kardamiliotis@gmail.com>
Date: 2024-04-24 11:38:57 +0300
Commit message:
Bioconductor 3.19 release commit
Package: fenr
Commit: 104b0d4ae30e83255a4be0355b46d1d425e6b26e
Author: Marek Gierlinski <Marek.Gierlinski@gmail.com>
Date: 2024-04-24 09:15:02 +0100
Commit message:
Commit: 104b0d4ae30e83255a4be0355b46d1d425e6b26e
Author: Marek Gierlinski <Marek.Gierlinski@gmail.com>
Date: 2024-04-24 09:15:02 +0100
Commit message:
Version 1.0.8. Improving error handling
Package: cleaver
Commit: a85947b60d7b846a5ca95f3979908b5439fa7ae6
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 10:15:30 +0200
Commit message:
Commit: a85947b60d7b846a5ca95f3979908b5439fa7ae6
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 10:15:30 +0200
Commit message:
ci: upgrade to biocthis::use_bioc_github_action('devel')
Package: cleaver
Commit: 5f02afa33a2b2aabb0cc1998d11abe861a202021
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:57:59 +0200
Commit message:
Commit: 5f02afa33a2b2aabb0cc1998d11abe861a202021
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:57:59 +0200
Commit message:
chore: bump version
Package: cleaver
Commit: c5b3b798847bb58b269da49fb7850fe93e3a288c
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:57:48 +0200
Commit message:
Commit: c5b3b798847bb58b269da49fb7850fe93e3a288c
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:57:48 +0200
Commit message:
fix: use along.with instead of along to avoid partial matching
Package: cleaver
Commit: c2db5c2776ae4e82b29f049b6b754b0a430979de
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:56:55 +0200
Commit message:
Commit: c2db5c2776ae4e82b29f049b6b754b0a430979de
Author: Sebastian Gibb <mail@sebastiangibb.de>
Date: 2024-04-24 09:56:55 +0200
Commit message:
feat: add trypsin-{high,low,simple}
Package: SFEData
Commit: 63324c09ad8c6393fe382b197013d2c1117782f9
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-24 01:07:53 -0700
Commit message:
Commit: 63324c09ad8c6393fe382b197013d2c1117782f9
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-24 01:07:53 -0700
Commit message:
Added note on raw bytes in XeniumOutput
Package: SFEData
Commit: cf613beee8aaac7a72a228838be94e3805debd9e
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-24 01:04:22 -0700
Commit message:
Commit: cf613beee8aaac7a72a228838be94e3805debd9e
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-24 01:04:22 -0700
Commit message:
Made XOA v2 data subset. Cropping the multi file OME-TIFF was the worst pain in the ass.
Package: SFEData
Commit: 9bf639c9154186bdfc1ad178f805b0f8d31830c9
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-23 18:10:25 -0700
Commit message:
Commit: 9bf639c9154186bdfc1ad178f805b0f8d31830c9
Author: Lambda Moses <dlu2@caltech.edu>
Date: 2024-04-23 18:10:25 -0700
Commit message:
Added Seurat test data
Package: zitools
Commit: eec747685335757efb0281bfc130aa7dff38b81f
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 09:44:49 +0200
Commit message:
Commit: eec747685335757efb0281bfc130aa7dff38b81f
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 09:44:49 +0200
Commit message:
Update News File
Package: zitools
Commit: 0e1aa28728d066775c8cc1692d6fe7211c478417
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 09:18:59 +0200
Commit message:
Commit: 0e1aa28728d066775c8cc1692d6fe7211c478417
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-24 09:18:59 +0200
Commit message:
Update NEWS File
Package: atena
Commit: ad226bc0b12ec6b4aa938aa3a59bad03ba2ba614
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-24 09:12:58 +0200
Commit message:
Commit: ad226bc0b12ec6b4aa938aa3a59bad03ba2ba614
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-24 09:12:58 +0200
Commit message:
Updated vignette, added progress reporting messages
Package: dar
Commit: d86de14543ad38aa8fcbe749ae0fe9a11ab020ef
Author: xec-cm <fcatala@irsicaixa.es>
Date: 2024-04-24 08:28:11 +0200
Commit message:
Commit: d86de14543ad38aa8fcbe749ae0fe9a11ab020ef
Author: xec-cm <fcatala@irsicaixa.es>
Date: 2024-04-24 08:28:11 +0200
Commit message:
bump
Package: dar
Commit: 29a3d4adc846ef559a3d41aefd3d2053219a3e2a
Author: xec-cm <fcatala@irsicaixa.es>
Date: 2024-04-24 08:26:53 +0200
Commit message:
Commit: 29a3d4adc846ef559a3d41aefd3d2053219a3e2a
Author: xec-cm <fcatala@irsicaixa.es>
Date: 2024-04-24 08:26:53 +0200
Commit message:
Update data_import.Rmd
Package: amplican
Commit: b6cdef124c10cdb9b1eca5baebcc5fbccdbf14d5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 22:40:12 -0700
Commit message:
Commit: b6cdef124c10cdb9b1eca5baebcc5fbccdbf14d5
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 22:40:12 -0700
Commit message:
import coverage from IRanges
Package: amplican
Commit: 1389265bbdd6362fe075efa9ec2358bc73fbb995
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 22:34:34 -0700
Commit message:
Commit: 1389265bbdd6362fe075efa9ec2358bc73fbb995
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 22:34:34 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostring to pwalign
Package: ClassifyR
Commit: beae92285cd98ea487eb5337f71356d4b83ad4b2
Author: Dario Strbenac <dario@maths.usyd.edu.au>
Date: 2024-04-24 15:25:36 +1000
Commit message:
Commit: beae92285cd98ea487eb5337f71356d4b83ad4b2
Author: Dario Strbenac <dario@maths.usyd.edu.au>
Date: 2024-04-24 15:25:36 +1000
Commit message:
- News file updated in preparation for next Bioconductor release.
Package: Rcpi
Commit: 6bd4a59c378da46c1e9c6ce59ca3b0ed16b49838
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:59:03 -0700
Commit message:
Commit: 6bd4a59c378da46c1e9c6ce59ca3b0ed16b49838
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:59:03 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: QuartPAC
Commit: ab5838bf15eeb726a428c2b89afc07f3587aa2ef
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:45:33 -0700
Commit message:
Commit: ab5838bf15eeb726a428c2b89afc07f3587aa2ef
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:45:33 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: GUIDEseq
Commit: 27314e39213fb51ed312f31cb7d26523224bfe4b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:08:55 -0700
Commit message:
Commit: 27314e39213fb51ed312f31cb7d26523224bfe4b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 21:08:55 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostrings to pwalign
Package: girafe
Commit: 7fd255495078c36e9b6a1a5c8c8fcef491c3fd9a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 20:46:26 -0700
Commit message:
Commit: 7fd255495078c36e9b6a1a5c8c8fcef491c3fd9a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 20:46:26 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: IMMAN
Commit: 298baab116ffae96e3963dd501ceddd68f9a45bf
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:51:55 -0700
Commit message:
Commit: 298baab116ffae96e3963dd501ceddd68f9a45bf
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:51:55 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: QSutils
Commit: a2ba66be100df1a2dd8a52d422bb1ca1c32d221c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:45:18 -0700
Commit message:
Commit: a2ba66be100df1a2dd8a52d422bb1ca1c32d221c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:45:18 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: methylscaper
Commit: e3b95d38d37d250607520b951734e275b886d344
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:34:25 -0700
Commit message:
Commit: e3b95d38d37d250607520b951734e275b886d344
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:34:25 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostrings to pwalign
Package: DMRcate
Commit: 3bfb7c55412ff594c79f38ab78af7028261bfed1
Author: timpet <t.peters@garvan.org.au>
Date: 2024-04-24 12:25:00 +1000
Commit message:
Commit: 3bfb7c55412ff594c79f38ab78af7028261bfed1
Author: timpet <t.peters@garvan.org.au>
Date: 2024-04-24 12:25:00 +1000
Commit message:
DMRcate_2.99.6
Package: sangerseqR
Commit: a3fbf6b28fdf531b774a2b42dda6c0285d05063c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:22:11 -0700
Commit message:
Commit: a3fbf6b28fdf531b774a2b42dda6c0285d05063c
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:22:11 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: BioNAR
Commit: 14ae53f85bada21668274b55bdb779e45cb10e3a
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:12:43 +0900
Commit message:
Commit: 14ae53f85bada21668274b55bdb779e45cb10e3a
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:12:43 +0900
Commit message:
version bumps up
Package: BioNAR
Commit: ed15467d3de2d5558769fbd297714cd33a3e2316
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:12:31 +0900
Commit message:
Commit: ed15467d3de2d5558769fbd297714cd33a3e2316
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:12:31 +0900
Commit message:
add GRPEL1 name to all invocation of annotateGeneName
Package: BioNAR
Commit: d8c789c47b655fdbf8e77cb4c21920bb8430dbb4
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:11:38 +0900
Commit message:
Commit: d8c789c47b655fdbf8e77cb4c21920bb8430dbb4
Author: Anatoly Sorokin <lptolik@gmail.com>
Date: 2024-04-24 11:11:38 +0900
Commit message:
review the plot snapshots
Package: R453Plus1Toolbox
Commit: aede3c3dde6a95b6adc8cca2ed6deead4464e127
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:07:18 -0700
Commit message:
Commit: aede3c3dde6a95b6adc8cca2ed6deead4464e127
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 19:07:18 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostrings to pwalign
Package: edgeR
Commit: 992f8dc3e8d8dfb33be933a24c0aa230c4770e9e
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-24 11:52:05 +1000
Commit message:
Commit: 992f8dc3e8d8dfb33be933a24c0aa230c4770e9e
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-24 11:52:05 +1000
Commit message:
edgeR 4.1.26 - Seurat2PB() now checks for Seurat version. - Allow AveLogCPM to be NULL in .computePriorS2(). - Edit description of `design` argument in roast.DGEGLM().
Package: epiregulon.extra
Commit: aec704abd39f6fe6fdb9fab5ecf233c2fd051618
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-23 18:51:24 -0700
Commit message:
Commit: aec704abd39f6fe6fdb9fab5ecf233c2fd051618
Author: Xiaosai Yao <yao.xiaosai@gene.com>
Date: 2024-04-23 18:51:24 -0700
Commit message:
0.99.15 BioC review
Package: epiregulon.extra
Commit: 58c84936f9a92e7edfb36b4bc94fcfaef63be464
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-23 14:05:54 -0700
Commit message:
Commit: 58c84936f9a92e7edfb36b4bc94fcfaef63be464
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-23 14:05:54 -0700
Commit message:
typo
Package: epiregulon.extra
Commit: 1ccf0570017e32fa9c426132328dcc4aeb9887e0
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-23 11:50:25 -0700
Commit message:
Commit: 1ccf0570017e32fa9c426132328dcc4aeb9887e0
Author: Tomasz Wlodarczyk <tomwlo@gmail.com>
Date: 2024-04-23 11:50:25 -0700
Commit message:
Changes after BioC review
Package: MSA2dist
Commit: e0d3b1e9106bd4d133deeccf70af028dc5ff0216
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:50:22 -0700
Commit message:
Commit: e0d3b1e9106bd4d133deeccf70af028dc5ff0216
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:50:22 -0700
Commit message:
Substitution matrices BLOSUM* and PAM* have moved from Biostrings to pwalign
Package: MSA2dist
Commit: dbfa5346e8c60cd5f17906e25fb340de6b55387b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:45:02 -0700
Commit message:
Commit: dbfa5346e8c60cd5f17906e25fb340de6b55387b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:45:02 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: SeqArray
Commit: 9c6161626b8744bedf251c8ef8fc79d00a1a8c4c
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2024-04-23 20:17:46 -0500
Commit message:
Commit: 9c6161626b8744bedf251c8ef8fc79d00a1a8c4c
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2024-04-23 20:17:46 -0500
Commit message:
update seqApply()
Package: StructuralVariantAnnotation
Commit: ecffeacf00477ca87ee47250f9aa77eba3326ed4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:14:47 -0700
Commit message:
Commit: ecffeacf00477ca87ee47250f9aa77eba3326ed4
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 18:14:47 -0700
Commit message:
pairwiseAlignment() and related have moved from Biostrings to pwalign
Package: DominoEffect
Commit: 834c920f724087ab52dc0f43d36863777dd6a1c3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:51:12 -0700
Commit message:
Commit: 834c920f724087ab52dc0f43d36863777dd6a1c3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:51:12 -0700
Commit message:
pairwiseAlignment() and pid() have moved from Biostrings to pwalign
Package: HTSeqGenie
Commit: a5c0bdda1546ce65830aa5ac992fcc305d3bd9b8
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:33:48 -0700
Commit message:
Commit: a5c0bdda1546ce65830aa5ac992fcc305d3bd9b8
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:33:48 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: XNAString
Commit: 638859d4b089458bec9a43dd145cc6d99f80518a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:20:33 -0700
Commit message:
Commit: 638859d4b089458bec9a43dd145cc6d99f80518a
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 17:20:33 -0700
Commit message:
nucleotideSubstitutionMatrix() and pairwiseAlignment() have moved from Biostrings to pwalign
Package: clusterExperiment
Commit: ff4b21f8ed5b588395a50d5874b74acc1ad1ba04
Author: Elizabeth Purdom <epurdom@stat.berkeley.edu>
Date: 2024-04-23 16:54:06 -0700
Commit message:
Commit: ff4b21f8ed5b588395a50d5874b74acc1ad1ba04
Author: Elizabeth Purdom <epurdom@stat.berkeley.edu>
Date: 2024-04-23 16:54:06 -0700
Commit message:
passes tests
Package: motifbreakR
Commit: 227e6df5ea6b780c51f9db103ed07d495752cef0
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:41:48 -0700
Commit message:
Commit: 227e6df5ea6b780c51f9db103ed07d495752cef0
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:41:48 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: idpr
Commit: 3cd821c30b0d66a9723301a1e09c5a6183981b5e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:28:08 -0700
Commit message:
Commit: 3cd821c30b0d66a9723301a1e09c5a6183981b5e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:28:08 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: ShortRead
Commit: 4699244596409a99845cf573d84af5cf083e8239
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:01:33 -0700
Commit message:
Commit: 4699244596409a99845cf573d84af5cf083e8239
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 16:01:33 -0700
Commit message:
Import selectively from Biostrings rather than in bulk This is to avoid load-time warning: replacing previous import ‘Biostrings::pairwiseAlignment’ by ‘pwalign::pairwiseAlignment’ when loading ‘ShortRead’
Package: gemma.R
Commit: 9a1b28df08d41ac56e06ce88b4d62ebfeaea8c95
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-23 15:59:00 -0700
Commit message:
Commit: 9a1b28df08d41ac56e06ce88b4d62ebfeaea8c95
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-23 15:59:00 -0700
Commit message:
version bump
Package: gemma.R
Commit: 465edd3aa0825b710b9623cd724db8ec91ea9810
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-23 15:58:37 -0700
Commit message:
Commit: 465edd3aa0825b710b9623cd724db8ec91ea9810
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-23 15:58:37 -0700
Commit message:
fix title
Package: gemma.R
Commit: 6468a31dd2f6311aad7ba3cb5151abb8f0b727e7
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:45:03 -0700
Commit message:
Commit: 6468a31dd2f6311aad7ba3cb5151abb8f0b727e7
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:45:03 -0700
Commit message:
add news of 3.0
Package: gemma.R
Commit: 1fca17b04cb1d6a6c0c195d119164e2d8a43a1f3
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:29:46 -0700
Commit message:
Commit: 1fca17b04cb1d6a6c0c195d119164e2d8a43a1f3
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:29:46 -0700
Commit message:
few things to ignore
Package: gemma.R
Commit: b3345a26f8094785439a7599e4bee2e8aa048aa8
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:28:50 -0700
Commit message:
Commit: b3345a26f8094785439a7599e4bee2e8aa048aa8
Author: OganM <ogan.mancarci@gmail.com>
Date: 2024-04-12 16:28:50 -0700
Commit message:
delete html
Package: RSVSim
Commit: edfc0c7ad251f66e1e51623b507dc7cf37f48947
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 15:35:06 -0700
Commit message:
Commit: edfc0c7ad251f66e1e51623b507dc7cf37f48947
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 15:35:06 -0700
Commit message:
Add pwalign to Suggests compareSVs() uses nucleotideSubstitutionMatrix() and pairwiseAlignment() internally which have moved from Biostrings to pwalign.
Package: MSstats
Commit: 5a5c036ee37decb13298ba428d93d95290a5c428
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2024-04-24 00:26:27 +0200
Commit message:
Commit: 5a5c036ee37decb13298ba428d93d95290a5c428
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2024-04-24 00:26:27 +0200
Commit message:
removed error log
Package: BioCor
Commit: 8233e6a4579fe99d451faabc9f350b5da3f8be73
Author: Lluís <lluis.revilla@gmail.com>
Date: 2024-04-23 23:39:15 +0200
Commit message:
Commit: 8233e6a4579fe99d451faabc9f350b5da3f8be73
Author: Lluís <lluis.revilla@gmail.com>
Date: 2024-04-23 23:39:15 +0200
Commit message:
Prepare NEWS so that it matches in the release
Package: MSstats
Commit: 3cecb354760bb869d4dbe0756135f9ce37bb37c4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2024-04-23 22:53:42 +0200
Commit message:
Commit: 3cecb354760bb869d4dbe0756135f9ce37bb37c4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2024-04-23 22:53:42 +0200
Commit message:
removed error log
Package: gDRcore
Commit: 968d74c797c5655a33637485e0be9c70d823acf3
Author: gDR team <gdr-support-d@gene.com>
Date: 2024-04-23 20:34:40 +0000
Commit message:
Commit: 968d74c797c5655a33637485e0be9c70d823acf3
Author: gDR team <gdr-support-d@gene.com>
Date: 2024-04-23 20:34:40 +0000
Commit message:
Merge branch 'main' into devel
Package: gDRcore
Commit: b1d4e3adbeef4169dba69c7ee8c9aec8344e7dde
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2024-04-23 22:34:25 +0200
Commit message:
Commit: b1d4e3adbeef4169dba69c7ee8c9aec8344e7dde
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2024-04-23 22:34:25 +0200
Commit message:
Merge pull request #147 from gdrplatform/GDR-2506 Gdr 2506
Package: gDRcore
Commit: b4dfef4cf61af317187c76847241e86560aca64e
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 20:42:17 +0200
Commit message:
Commit: b4dfef4cf61af317187c76847241e86560aca64e
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 20:42:17 +0200
Commit message:
ci: resolve conflict
Package: gDRcore
Commit: ced2cfd0b1ca4e00ee34182619fdcae9093dfc7b
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:13:18 +0200
Commit message:
Commit: ced2cfd0b1ca4e00ee34182619fdcae9093dfc7b
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:13:18 +0200
Commit message:
doc: update as per review (II)
Package: gDRcore
Commit: 637043f92915cb1decdc7c36bee032e5a9cfa4d7
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 10:41:42 +0200
Commit message:
Commit: 637043f92915cb1decdc7c36bee032e5a9cfa4d7
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 10:41:42 +0200
Commit message:
doc: udpate as per review
Package: gDRcore
Commit: aa450c6e8cd7d8735e8d9810ce07ecca45bd9504
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 17:16:53 +0200
Commit message:
Commit: aa450c6e8cd7d8735e8d9810ce07ecca45bd9504
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 17:16:53 +0200
Commit message:
chore: bump version and update NEWS.md
Package: gDRcore
Commit: 403afffebaca199aad415b702a7f269151769d1a
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 17:16:08 +0200
Commit message:
Commit: 403afffebaca199aad415b702a7f269151769d1a
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 17:16:08 +0200
Commit message:
doc: add vignette for data annotation
Package: zitools
Commit: cf2da098373546c4ee561431b769c49870af6221
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-23 15:18:48 +0200
Commit message:
Commit: cf2da098373546c4ee561431b769c49870af6221
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-23 15:18:48 +0200
Commit message:
Update Version Number
Package: zitools
Commit: 2900c7888d3ce7049f04aee7b11c61bb20e19cb9
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-22 10:40:22 +0200
Commit message:
Commit: 2900c7888d3ce7049f04aee7b11c61bb20e19cb9
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-22 10:40:22 +0200
Commit message:
change Vignette Header
Package: zitools
Commit: 91fef13c2b202e8d947e0b84c50781efc2305fdc
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-08 15:32:05 +0200
Commit message:
Commit: 91fef13c2b202e8d947e0b84c50781efc2305fdc
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-08 15:32:05 +0200
Commit message:
Update R Dependency
Package: zitools
Commit: 82af89d9ebbd644b03d9d59ee0e307f6e5bb1c27
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-08 15:14:13 +0200
Commit message:
Commit: 82af89d9ebbd644b03d9d59ee0e307f6e5bb1c27
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-08 15:14:13 +0200
Commit message:
address Bioconductor Comments
Package: zitools
Commit: b71f50f56212e6c83098b4f6e935bbdfd64e4b32
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 09:02:24 +0200
Commit message:
Commit: b71f50f56212e6c83098b4f6e935bbdfd64e4b32
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 09:02:24 +0200
Commit message:
Adress Bioconductor comments
Package: zitools
Commit: 5bfef97c2689fc06244924eff33d46b923884ed8
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 08:11:35 +0200
Commit message:
Commit: 5bfef97c2689fc06244924eff33d46b923884ed8
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 08:11:35 +0200
Commit message:
adress Bioconductor comments
Package: zitools
Commit: 233dc44cb97ce618c8e35bb2a5833e501e7ae90f
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 08:10:06 +0200
Commit message:
Commit: 233dc44cb97ce618c8e35bb2a5833e501e7ae90f
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-06 08:10:06 +0200
Commit message:
adress Bioconductor comments
Package: zitools
Commit: 1e306eaf2b8306c1432ac79c162c252597f3dfc7
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-05 00:28:56 +0200
Commit message:
Commit: 1e306eaf2b8306c1432ac79c162c252597f3dfc7
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-05 00:28:56 +0200
Commit message:
minor changes
Package: zitools
Commit: aa81a2e8e8f0abdb7a672a99fabb0fb2483a80ab
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 15:20:46 +0200
Commit message:
Commit: aa81a2e8e8f0abdb7a672a99fabb0fb2483a80ab
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 15:20:46 +0200
Commit message:
minor changes
Package: zitools
Commit: fd12869c8374daa68b5a322fc92314c1a3fe03f2
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 12:39:33 +0200
Commit message:
Commit: fd12869c8374daa68b5a322fc92314c1a3fe03f2
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 12:39:33 +0200
Commit message:
Merge branch 'main' of https://github.com/kreutz-lab/zitools
Package: zitools
Commit: df5d46079a9c54438c738fa428ce96656192d065
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 12:39:12 +0200
Commit message:
Commit: df5d46079a9c54438c738fa428ce96656192d065
Author: cmeyring <carlotta-meyring@web.de>
Date: 2024-04-04 12:39:12 +0200
Commit message:
Adress Bioconductor changes
Package: zitools
Commit: 4eabb857af3ece6cdc8992b51cbc73a4fd4e41a8
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-04 12:00:37 +0200
Commit message:
Commit: 4eabb857af3ece6cdc8992b51cbc73a4fd4e41a8
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-04 12:00:37 +0200
Commit message:
Create NEWS.md
Package: zitools
Commit: 41fb2cf196706ad66993439cb7c2b8e83803200e
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-03 07:58:24 +0200
Commit message:
Commit: 41fb2cf196706ad66993439cb7c2b8e83803200e
Author: cmeyring <122982530+cmeyring@users.noreply.github.com>
Date: 2024-04-03 07:58:24 +0200
Commit message:
Update README.md
Package: BatchQC
Commit: bbf6cb9a7a8820b3ff4b7d2b47bc015cf68c7d5d
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 15:38:42 -0400
Commit message:
Commit: bbf6cb9a7a8820b3ff4b7d2b47bc015cf68c7d5d
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 15:38:42 -0400
Commit message:
Update numbering in Intro vignette
Package: iPAC
Commit: 67a43c7463970e629960086cf4a06727c193536f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 12:31:23 -0700
Commit message:
Commit: 67a43c7463970e629960086cf4a06727c193536f
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 12:31:23 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: MethTargetedNGS
Commit: 4b0586630fdbeeebe405ca9da2295742941109bb
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 12:07:27 -0700
Commit message:
Commit: 4b0586630fdbeeebe405ca9da2295742941109bb
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 12:07:27 -0700
Commit message:
pairwiseAlignment() and nucleotideSubstitutionMatrix() have moved from Biostrings to pwalign
Package: enhancerHomologSearch
Commit: b67050aabe3fbf986ade258dcc7da057c5909d11
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:56:07 -0700
Commit message:
Commit: b67050aabe3fbf986ade258dcc7da057c5909d11
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:56:07 -0700
Commit message:
unaligned() has moved from Biostrings to pwalign
Package: gDRcore
Commit: cac1766f14fdbb3bf1291c74e05294246a1e2c00
Author: gDR team <gdr-support-d@gene.com>
Date: 2024-04-23 18:41:12 +0000
Commit message:
Commit: cac1766f14fdbb3bf1291c74e05294246a1e2c00
Author: gDR team <gdr-support-d@gene.com>
Date: 2024-04-23 18:41:12 +0000
Commit message:
Merge branch 'main' into devel
Package: gDRcore
Commit: d0caaee2b3e9acf8d092a0d9137d129d24876fca
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2024-04-23 20:40:58 +0200
Commit message:
Commit: d0caaee2b3e9acf8d092a0d9137d129d24876fca
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2024-04-23 20:40:58 +0200
Commit message:
Merge pull request #146 from gdrplatform/GDR-2505 Gdr 2505
Package: gDRcore
Commit: 24b866523d0422cfb616da4b82c7b635baa1f4f9
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:31:21 +0200
Commit message:
Commit: 24b866523d0422cfb616da4b82c7b635baa1f4f9
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:31:21 +0200
Commit message:
refactor: reoxygenate
Package: gDRcore
Commit: 601885437b85a7565c6d5c41cbf9f0cd21f3d05e
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:25:33 +0200
Commit message:
Commit: 601885437b85a7565c6d5c41cbf9f0cd21f3d05e
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:25:33 +0200
Commit message:
doc: update documentation
Package: gDRcore
Commit: cdb5220cdbf79194210a879fbbfcdceb27e8ec79
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:23:53 +0200
Commit message:
Commit: cdb5220cdbf79194210a879fbbfcdceb27e8ec79
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 11:23:53 +0200
Commit message:
doc: update env vars
Package: gDRcore
Commit: 4d4b29b2b0fa3036ba6c5dfb34026ed345cc5343
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 08:53:25 +0200
Commit message:
Commit: 4d4b29b2b0fa3036ba6c5dfb34026ed345cc5343
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-23 08:53:25 +0200
Commit message:
refactor: update as per questions
Package: gDRcore
Commit: 148ef077ceba5406d91fd553753d7d52cfdd1e27
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:55 +0200
Commit message:
Commit: 148ef077ceba5406d91fd553753d7d52cfdd1e27
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:55 +0200
Commit message:
chore: bump version and update NEWS.md
Package: gDRcore
Commit: 6d7afb123860a31cd1bf282ff054d9f70b64a5f3
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:09 +0200
Commit message:
Commit: 6d7afb123860a31cd1bf282ff054d9f70b64a5f3
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:09 +0200
Commit message:
test: update unit tests
Package: gDRcore
Commit: d770d63909fb4a7bb3afc160fdffac83e2f7d69a
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:02 +0200
Commit message:
Commit: d770d63909fb4a7bb3afc160fdffac83e2f7d69a
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:25:02 +0200
Commit message:
refactor: reoxygenate
Package: gDRcore
Commit: a50ccd8ce1ee497abd9ba0a4c132eefff79cffcd
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:24:41 +0200
Commit message:
Commit: a50ccd8ce1ee497abd9ba0a4c132eefff79cffcd
Author: czechb3 <bartosz.w.czech@gmail.com>
Date: 2024-04-22 10:24:41 +0200
Commit message:
feat: add support for external files with annotation
Package: CNEr
Commit: 11d7b371bc7eff182dd2eea4f006399e946b825d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:40:06 -0700
Commit message:
Commit: 11d7b371bc7eff182dd2eea4f006399e946b825d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:40:06 -0700
Commit message:
compareStrings() has moved from Biostrings to pwalign
Package: BatchQC
Commit: 447afb52263e346edf736048d3ea88905a4db229
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:28:12 -0400
Commit message:
Commit: 447afb52263e346edf736048d3ea88905a4db229
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:28:12 -0400
Commit message:
update version number
Package: BatchQC
Commit: a7aa66b391576069a78f080338fb53f768035352
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:27:45 -0400
Commit message:
Commit: a7aa66b391576069a78f080338fb53f768035352
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:27:45 -0400
Commit message:
update spacing
Package: BatchQC
Commit: 29f95bbfdcc6f599bf116c0c4b5a838edd53fab9
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2024-04-23 14:24:40 -0400
Commit message:
Commit: 29f95bbfdcc6f599bf116c0c4b5a838edd53fab9
Author: Jessica <102758461+jessmcc22@users.noreply.github.com>
Date: 2024-04-23 14:24:40 -0400
Commit message:
Merge pull request #94 from jessmcc22/devel Update assay name to underscores
Package: BatchQC
Commit: 25a184324e25a00c8b6cd7720de8e7d2b7968ced
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:21:55 -0400
Commit message:
Commit: 25a184324e25a00c8b6cd7720de8e7d2b7968ced
Author: jessmcc22Mac <jessmcc@bu.edu>
Date: 2024-04-23 14:21:55 -0400
Commit message:
Update assay name to underscores
Package: RnBeads.hg38
Commit: 0cd6253b6a535c827644d077414dba4163b52fba
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 20:15:36 +0200
Commit message:
Commit: 0cd6253b6a535c827644d077414dba4163b52fba
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 20:15:36 +0200
Commit message:
gitignore
Package: RnBeads.hg38
Commit: 674e1b65afde1a39c2a31ef80ea4285187a3d335
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 20:13:28 +0200
Commit message:
Commit: 674e1b65afde1a39c2a31ef80ea4285187a3d335
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 20:13:28 +0200
Commit message:
Major hg38 update including EPICv2 support
Package: ChIPpeakAnno
Commit: 9e0412d3b6d46acbbbfac7ffd2eb2a5b721f33e3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:14:00 -0700
Commit message:
Commit: 9e0412d3b6d46acbbbfac7ffd2eb2a5b721f33e3
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:14:00 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: TFBSTools
Commit: f3a764486bb113c81aa15b7b8da0fa239e1a7e24
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:11:36 -0700
Commit message:
Commit: f3a764486bb113c81aa15b7b8da0fa239e1a7e24
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 11:11:36 -0700
Commit message:
The PairwiseAlignments class has moved from Biostrings to pwalign
Package: RnBeads.hg38
Commit: 8ff9c195d5024b11c593d34f5c7e88b24d1e321b
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 08:29:05 +0200
Commit message:
Commit: 8ff9c195d5024b11c593d34f5c7e88b24d1e321b
Author: Fabian Müller <fmueller@mpi-inf.mpg.de>
Date: 2024-04-23 08:29:05 +0200
Commit message:
Description update and commit check
Package: ShortRead
Commit: d1a4e25f00a7bf9ef3518d777894079b8b18d2db
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 10:46:45 -0700
Commit message:
Commit: d1a4e25f00a7bf9ef3518d777894079b8b18d2db
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 10:46:45 -0700
Commit message:
pairwiseAlignment() has moved from Biostrings to pwalign
Package: DECIPHER
Commit: 986760602875b50d2b0b8ff727086210d1d3b7da
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 10:21:30 -0700
Commit message:
Commit: 986760602875b50d2b0b8ff727086210d1d3b7da
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 10:21:30 -0700
Commit message:
small edit
Package: singleCellTK
Commit: feb7d1950e5eb27ddf7bdeadf77775d32cb64a8b
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 13:10:37 -0400
Commit message:
Commit: feb7d1950e5eb27ddf7bdeadf77775d32cb64a8b
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 13:10:37 -0400
Commit message:
Un-deprecate
Package: MSstatsTMT
Commit: ffcde2e2e81a9f65409fcd4fedf9f920d6d11749
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-23 13:04:49 -0400
Commit message:
Commit: ffcde2e2e81a9f65409fcd4fedf9f920d6d11749
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-23 13:04:49 -0400
Commit message:
merge conflict
Package: MSstatsTMT
Commit: 79fbeb9f515c9222761475de8ef80becacf0bf38
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-23 12:54:43 -0400
Commit message:
Commit: 79fbeb9f515c9222761475de8ef80becacf0bf38
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2024-04-23 12:54:43 -0400
Commit message:
updated package maintainer
Package: MSstatsTMT
Commit: a70308cd7d170ce77ed9eb07e5ed7be5ec60a06e
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-04-23 12:45:00 -0400
Commit message:
Commit: a70308cd7d170ce77ed9eb07e5ed7be5ec60a06e
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2024-04-23 12:45:00 -0400
Commit message:
Update .gitignore
Package: MSstatsTMT
Commit: 6fda14b3be54a965cd7caff9d67136c153dfe532
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2023-02-26 15:49:33 -0800
Commit message:
Commit: 6fda14b3be54a965cd7caff9d67136c153dfe532
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2023-02-26 15:49:33 -0800
Commit message:
update description and news
Package: MSstatsTMT
Commit: 826cf57916f51a717e47f9bee3df03c20b0a7c92
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2023-02-23 19:54:55 -0500
Commit message:
Commit: 826cf57916f51a717e47f9bee3df03c20b0a7c92
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2023-02-23 19:54:55 -0500
Commit message:
Merge pull request #68 from Vitek-Lab/dev Dev
Package: MSstatsTMT
Commit: 86e32af81e4413a7ce47e2b2d706589b2230246e
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2023-02-23 19:53:51 -0500
Commit message:
Commit: 86e32af81e4413a7ce47e2b2d706589b2230246e
Author: Devon Kohler <35807256+devonjkohler@users.noreply.github.com>
Date: 2023-02-23 19:53:51 -0500
Commit message:
Merge pull request #67 from Vitek-Lab/philosopher-input-change Philosopher input change
Package: MSstatsTMT
Commit: f68283781c78408b3e41b964cb4ed562f0f3f2bb
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-23 19:47:16 -0500
Commit message:
Commit: f68283781c78408b3e41b964cb4ed562f0f3f2bb
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-23 19:47:16 -0500
Commit message:
philosopher documentation
Package: MSstatsTMT
Commit: 881f90a3a42aa9f9866dd720d02c91849117d1f6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-21 08:43:17 -0500
Commit message:
Commit: 881f90a3a42aa9f9866dd720d02c91849117d1f6
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-21 08:43:17 -0500
Commit message:
minor changes to refactored converter
Package: MSstatsTMT
Commit: 4701489ee02592bd343c0d5d7100ce2f47331e97
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-18 14:30:46 -0500
Commit message:
Commit: 4701489ee02592bd343c0d5d7100ce2f47331e97
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-18 14:30:46 -0500
Commit message:
fixed param defaults
Package: MSstatsTMT
Commit: 40a0d9b40fd4ce72bc601a29e339a505cd1dd5f0
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-18 14:27:40 -0500
Commit message:
Commit: 40a0d9b40fd4ce72bc601a29e339a505cd1dd5f0
Author: devonjkohler <devonjkohler@gmail.com>
Date: 2023-02-18 14:27:40 -0500
Commit message:
updated phil converter
Package: MSstatsTMT
Commit: 9cbf9bbbf2ec928993816b1755deae4e5206b7ec
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-09-12 21:48:16 -0700
Commit message:
Commit: 9cbf9bbbf2ec928993816b1755deae4e5206b7ec
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-09-12 21:48:16 -0700
Commit message:
Merge pull request #64 from Vitek-Lab/hotifx-normalization candidate fix for normalization issue
Package: MSstatsTMT
Commit: 09f5a7c138f64ebfe311435d5cd0e7f441510608
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-08-31 19:53:11 +0200
Commit message:
Commit: 09f5a7c138f64ebfe311435d5cd0e7f441510608
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-08-31 19:53:11 +0200
Commit message:
candidate fix for normalization issue
Package: MSstatsTMT
Commit: 05d27934cb37a42218df7d7c7abcfca6d96dc0d6
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 13:39:31 -0500
Commit message:
Commit: 05d27934cb37a42218df7d7c7abcfca6d96dc0d6
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 13:39:31 -0500
Commit message:
Merge pull request #60 from Vitek-Lab/refactoring update version number
Package: MSstatsTMT
Commit: 620275d29e5609e9f782e47e7d380eaf7dd4e76e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-18 13:38:58 -0500
Commit message:
Commit: 620275d29e5609e9f782e47e7d380eaf7dd4e76e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-18 13:38:58 -0500
Commit message:
update version number
Package: MSstatsTMT
Commit: 6632fd900c705c3f816337bfc66b473e1d7c7d87
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 13:12:59 -0500
Commit message:
Commit: 6632fd900c705c3f816337bfc66b473e1d7c7d87
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 13:12:59 -0500
Commit message:
Merge pull request #59 from Vitek-Lab/hotfix-philosopher-paths Hotfix philosopher paths
Package: MSstatsTMT
Commit: 68a8ea2c858e6e13e888807de0e1034926c67906
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 18:54:12 +0100
Commit message:
Commit: 68a8ea2c858e6e13e888807de0e1034926c67906
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 18:54:12 +0100
Commit message:
fixed param name
Package: MSstatsTMT
Commit: 66ea82b699497af366502a9d70fada1218209cd7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 18:22:13 +0100
Commit message:
Commit: 66ea82b699497af366502a9d70fada1218209cd7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 18:22:13 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: d1df3572ad31ccef0ef5648aa1ebf1a1f1cf755a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 11:55:52 -0500
Commit message:
Commit: d1df3572ad31ccef0ef5648aa1ebf1a1f1cf755a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-18 11:55:52 -0500
Commit message:
Merge pull request #58 from Vitek-Lab/hotfix-philosopher-paths updated Philosopher inputs
Package: MSstatsTMT
Commit: 408230afaa8c08cc6c1f9a5916682bfab36c35f0
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:46:18 +0100
Commit message:
Commit: 408230afaa8c08cc6c1f9a5916682bfab36c35f0
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:46:18 +0100
Commit message:
fixed check in Philpsopher converter
Package: MSstatsTMT
Commit: 98f2c6a2c15f97867d343a3708c0d4622ce127a7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:45:04 +0100
Commit message:
Commit: 98f2c6a2c15f97867d343a3708c0d4622ce127a7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:45:04 +0100
Commit message:
fixed a typo
Package: MSstatsTMT
Commit: 4684c66deb92e4a82057117cb80fb032fc9e1c90
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:43:13 +0100
Commit message:
Commit: 4684c66deb92e4a82057117cb80fb032fc9e1c90
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:43:13 +0100
Commit message:
fixed a typo
Package: MSstatsTMT
Commit: 0d0576446ac0d0eb0813ecd1219c3ae0ef15bac1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:14:05 +0100
Commit message:
Commit: 0d0576446ac0d0eb0813ecd1219c3ae0ef15bac1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-18 13:14:05 +0100
Commit message:
updated Philosopher inputs
Package: MSstatsTMT
Commit: c3023457bbe3fd19a2d6f1e69203fc0237a9c8af
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 19:02:45 -0500
Commit message:
Commit: c3023457bbe3fd19a2d6f1e69203fc0237a9c8af
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 19:02:45 -0500
Commit message:
Merge pull request #56 from Vitek-Lab/refactoring Update NEWS.rd
Package: MSstatsTMT
Commit: 6a52268594c44791c5b1583409d855e0950c8eeb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-14 19:01:57 -0500
Commit message:
Commit: 6a52268594c44791c5b1583409d855e0950c8eeb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-14 19:01:57 -0500
Commit message:
Update NEWS.rd
Package: MSstatsTMT
Commit: 76d3cb85dc4c67fc10cccb2df4b617e52f74721b
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 18:23:08 -0500
Commit message:
Commit: 76d3cb85dc4c67fc10cccb2df4b617e52f74721b
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 18:23:08 -0500
Commit message:
Merge pull request #55 from Vitek-Lab/refactoring Update version number and news
Package: MSstatsTMT
Commit: fe876a7e0f31540c5bed1eef3d47792971d7754b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-14 18:21:57 -0500
Commit message:
Commit: fe876a7e0f31540c5bed1eef3d47792971d7754b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2022-02-14 18:21:57 -0500
Commit message:
Update version number and news
Package: MSstatsTMT
Commit: ee3d2f6532bbcce3f771b20f79880831bcc65be1
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 17:25:07 -0500
Commit message:
Commit: ee3d2f6532bbcce3f771b20f79880831bcc65be1
Author: Ting Huang <thuang0703@gmail.com>
Date: 2022-02-14 17:25:07 -0500
Commit message:
Merge pull request #54 from Vitek-Lab/philosopher-converter Philosopher converter
Package: MSstatsTMT
Commit: 03cf34939a68cddd22f0ffb2e3d15ed7c248c8b4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-08 20:53:40 +0100
Commit message:
Commit: 03cf34939a68cddd22f0ffb2e3d15ed7c248c8b4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-08 20:53:40 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: 9c9a8ce1e147f8bc36397a321e1aef781ca5327b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 23:01:19 +0100
Commit message:
Commit: 9c9a8ce1e147f8bc36397a321e1aef781ca5327b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 23:01:19 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: e81ead3af80557d2e43e1a05d435887e3f4cfb58
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 22:41:56 +0100
Commit message:
Commit: e81ead3af80557d2e43e1a05d435887e3f4cfb58
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 22:41:56 +0100
Commit message:
fixed logical condition in Philosopher converter
Package: MSstatsTMT
Commit: 31e78d9e1be8cf0e255083688f5eafb8f569b8af
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 22:34:25 +0100
Commit message:
Commit: 31e78d9e1be8cf0e255083688f5eafb8f569b8af
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 22:34:25 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: 71eaa3f0832afc21163cc9e1c2ebab7c7496da60
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 21:43:05 +0100
Commit message:
Commit: 71eaa3f0832afc21163cc9e1c2ebab7c7496da60
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 21:43:05 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: af457c99ca82697f7b82bd4851c05eb685f40d55
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 21:42:22 +0100
Commit message:
Commit: af457c99ca82697f7b82bd4851c05eb685f40d55
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-07 21:42:22 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: c6e666151a24f03af928dd74173515d5d0e96c9b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-03 01:22:52 +0100
Commit message:
Commit: c6e666151a24f03af928dd74173515d5d0e96c9b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-03 01:22:52 +0100
Commit message:
updated Philosopher converter
Package: MSstatsTMT
Commit: 9aad06bbc70ddffc81c01a5f4090a8d6400f5398
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-03 00:42:28 +0100
Commit message:
Commit: 9aad06bbc70ddffc81c01a5f4090a8d6400f5398
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-02-03 00:42:28 +0100
Commit message:
added Philosopher converter
Package: MSstatsTMT
Commit: 8c741616bd5d7c12150a4bac45d2c7c05d93754d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-01-31 15:47:46 +0100
Commit message:
Commit: 8c741616bd5d7c12150a4bac45d2c7c05d93754d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2022-01-31 15:47:46 +0100
Commit message:
added Philosopher converter
Package: MSstatsTMT
Commit: 7618cdbf77452d3f0569c2a4171936abdd42e39a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-26 13:49:49 -0400
Commit message:
Commit: 7618cdbf77452d3f0569c2a4171936abdd42e39a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-26 13:49:49 -0400
Commit message:
Merge pull request #48 from Vitek-Lab/refactoring update news
Package: MSstatsTMT
Commit: be2a0f73b97789af2c7f4438829ae2ac5ca72c0b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-26 13:47:26 -0400
Commit message:
Commit: be2a0f73b97789af2c7f4438829ae2ac5ca72c0b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-26 13:47:26 -0400
Commit message:
udpate news
Package: MSstatsTMT
Commit: 3c945f7cd30eaa9db3e94e9ae80aa8051ff3e6ec
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-25 19:25:46 -0400
Commit message:
Commit: 3c945f7cd30eaa9db3e94e9ae80aa8051ff3e6ec
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-25 19:25:46 -0400
Commit message:
Merge pull request #47 from Vitek-Lab/hotifx-plot-censored-shape added shape as indicator of imputed values
Package: MSstatsTMT
Commit: 2f9b209d88c2c5aeec091a0c9e5e8d6d6a7a762d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-10-25 21:10:14 +0200
Commit message:
Commit: 2f9b209d88c2c5aeec091a0c9e5e8d6d6a7a762d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-10-25 21:10:14 +0200
Commit message:
added shape as indicator of imputed values per @ekzp6's suggestion
Package: MSstatsTMT
Commit: cbac0cf726a135c4dd56d1008d73ca06bc6fba93
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-11 02:16:45 -0400
Commit message:
Commit: cbac0cf726a135c4dd56d1008d73ca06bc6fba93
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-11 02:16:45 -0400
Commit message:
Merge pull request #46 from Vitek-Lab/refactoring Refactoring
Package: MSstatsTMT
Commit: 692ebdb6d3203b4e344bfe1c3d7160fed2483aca
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 02:15:59 -0400
Commit message:
Commit: 692ebdb6d3203b4e344bfe1c3d7160fed2483aca
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 02:15:59 -0400
Commit message:
Update DESCRIPTION
Package: MSstatsTMT
Commit: 7c98afef6715b926f01008786ebcde08d2fb9e7c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 02:01:36 -0400
Commit message:
Commit: 7c98afef6715b926f01008786ebcde08d2fb9e7c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 02:01:36 -0400
Commit message:
update internal data
Package: MSstatsTMT
Commit: 75adbcc5adb0220ada33e8d4ed2658e209466e3e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 00:58:17 -0400
Commit message:
Commit: 75adbcc5adb0220ada33e8d4ed2658e209466e3e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 00:58:17 -0400
Commit message:
Update utils_group_comparison.R
Package: MSstatsTMT
Commit: cc2ded5038e30623d91d6113883690d5fb259fd2
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-11 00:04:53 -0400
Commit message:
Commit: cc2ded5038e30623d91d6113883690d5fb259fd2
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-11 00:04:53 -0400
Commit message:
Merge pull request #45 from Vitek-Lab/refactoring Update DESCRIPTION
Package: MSstatsTMT
Commit: 386d9bb4b5de733b674fe3b48bd947ca9223ef98
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 00:03:32 -0400
Commit message:
Commit: 386d9bb4b5de733b674fe3b48bd947ca9223ef98
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-11 00:03:32 -0400
Commit message:
Update DESCRIPTION
Package: MSstatsTMT
Commit: 1f6962d3e8138903393dc52addf47d0488ac098a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-06 19:27:40 -0400
Commit message:
Commit: 1f6962d3e8138903393dc52addf47d0488ac098a
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-06 19:27:40 -0400
Commit message:
Merge pull request #44 from Vitek-Lab/refactoring Refactoring
Package: MSstatsTMT
Commit: a584ae0467a9af52526aad7aad0fc00dc5828e17
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-06 19:26:53 -0400
Commit message:
Commit: a584ae0467a9af52526aad7aad0fc00dc5828e17
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-10-06 19:26:53 -0400
Commit message:
Merge pull request #42 from Vitek-Lab/hotfix-gc-typo corrected typo
Package: MSstatsTMT
Commit: fb9466e8de07eb93b3cd18ad9cf7006d06dfd8a0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-06 19:24:48 -0400
Commit message:
Commit: fb9466e8de07eb93b3cd18ad9cf7006d06dfd8a0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-06 19:24:48 -0400
Commit message:
fix bug for infinite prior df
Package: MSstatsTMT
Commit: a859851439c56bb68ba888f3cb3d73d832dc5cba
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-06 19:08:20 -0400
Commit message:
Commit: a859851439c56bb68ba888f3cb3d73d832dc5cba
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-10-06 19:08:20 -0400
Commit message:
update version number
Package: MSstatsTMT
Commit: 358ee404124cf7940e8e82081f0b41b5de366688
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-09-28 00:44:50 +0200
Commit message:
Commit: 358ee404124cf7940e8e82081f0b41b5de366688
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-09-28 00:44:50 +0200
Commit message:
corrected typo
Package: MSstatsTMT
Commit: 3f5b0b05b010df45c2a1ab3b9c72823eafed2778
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-21 11:19:08 -0400
Commit message:
Commit: 3f5b0b05b010df45c2a1ab3b9c72823eafed2778
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-21 11:19:08 -0400
Commit message:
Merge pull request #40 from Vitek-Lab/hotfix-dpplot-xaxis Hotfix dpplot xaxis
Package: MSstatsTMT
Commit: 7833c59bd4edec91ca3526b2f6690e2f133e765b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-09-21 15:07:42 +0200
Commit message:
Commit: 7833c59bd4edec91ca3526b2f6690e2f133e765b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-09-21 15:07:42 +0200
Commit message:
updated dPPlots - fixed vertical line position
Package: MSstatsTMT
Commit: dca0b55e5715df14fd50d573d5c57d325649379e
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-20 17:39:26 -0400
Commit message:
Commit: dca0b55e5715df14fd50d573d5c57d325649379e
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-20 17:39:26 -0400
Commit message:
Merge pull request #39 from Vitek-Lab/refactoring Refactoring
Package: MSstatsTMT
Commit: e08dcc9a138f4b3c6d730debeac275545a83fff8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-20 17:38:19 -0400
Commit message:
Commit: e08dcc9a138f4b3c6d730debeac275545a83fff8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-20 17:38:19 -0400
Commit message:
update news
Package: MSstatsTMT
Commit: 58938bc584052062c339ed9b0f600eec55e2a7fb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-20 17:38:06 -0400
Commit message:
Commit: 58938bc584052062c339ed9b0f600eec55e2a7fb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-20 17:38:06 -0400
Commit message:
Add repeated measures design
Package: MSstatsTMT
Commit: dbe7cb0c4b364bf6ebcc38d5c416383d4e80c3d1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-12 17:25:37 -0400
Commit message:
Commit: dbe7cb0c4b364bf6ebcc38d5c416383d4e80c3d1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-09-12 17:25:37 -0400
Commit message:
Merge branch 'refactoring' of https://github.com/Vitek-Lab/MSstatsTMT into refactoring
Package: MSstatsTMT
Commit: da84c1a470444a94a267701aa939fa87ae5720a9
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-12 17:24:32 -0400
Commit message:
Commit: da84c1a470444a94a267701aa939fa87ae5720a9
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-09-12 17:24:32 -0400
Commit message:
Merge pull request #37 from Vitek-Lab/dev Sync updates from dev branch to refactoring branch
Package: MSstatsTMT
Commit: 91cbb2325502f953761ddfc81d991d8c00620f09
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-08-30 00:35:28 -0400
Commit message:
Commit: 91cbb2325502f953761ddfc81d991d8c00620f09
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-08-30 00:35:28 -0400
Commit message:
Merge pull request #36 from Vitek-Lab/hotfix-dpplots-x-axis Hotfix dpplots x axis
Package: MSstatsTMT
Commit: 80f9fed0f11934a006b97fc7e6a773ba1dfeef44
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-08-30 00:34:53 -0400
Commit message:
Commit: 80f9fed0f11934a006b97fc7e6a773ba1dfeef44
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-08-30 00:34:53 -0400
Commit message:
Merge pull request #31 from Vitek-Lab/hotfix-gsub-group updated gsub call
Package: MSstatsTMT
Commit: 25d4002d8e6aa078c7c623bccd885f5886e48915
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-08-16 16:29:44 +0200
Commit message:
Commit: 25d4002d8e6aa078c7c623bccd885f5886e48915
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-08-16 16:29:44 +0200
Commit message:
Update dataProcessPlotsTMT.R
Package: MSstatsTMT
Commit: cb0e38ec355e770166273d720b117dfff4aad72b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-06-19 00:11:50 +0200
Commit message:
Commit: cb0e38ec355e770166273d720b117dfff4aad72b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-06-19 00:11:50 +0200
Commit message:
updated gsub call
Package: MSstatsTMT
Commit: bff897c960b90470f8928cea5942a1c9296964f3
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-06-14 14:51:11 -0400
Commit message:
Commit: bff897c960b90470f8928cea5942a1c9296964f3
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-06-14 14:51:11 -0400
Commit message:
update description
Package: MSstatsTMT
Commit: d66cb643490c0636c648ed7fa8f88560bc96e5cb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-06-11 21:50:16 -0400
Commit message:
Commit: d66cb643490c0636c648ed7fa8f88560bc96e5cb
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-06-11 21:50:16 -0400
Commit message:
Update converters.R
Package: MSstatsTMT
Commit: e30c56476a86db995fc041833e92b676c79c2c18
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-06-11 14:52:19 -0400
Commit message:
Commit: e30c56476a86db995fc041833e92b676c79c2c18
Author: Ting Huang <thuang0703@gmail.com>
Date: 2021-06-11 14:52:19 -0400
Commit message:
Merge pull request #28 from Vitek-Lab/hotfix-no-imputation updated MSstats output processing
Package: MSstatsTMT
Commit: a8fe3a43d5285ccc8b8fe8e239e556414463ff9e
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-06-11 13:11:14 +0200
Commit message:
Commit: a8fe3a43d5285ccc8b8fe8e239e556414463ff9e
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-06-11 13:11:14 +0200
Commit message:
updated MSstats output processing
Package: MSstatsTMT
Commit: 72ba010b8002230e0a43742afcee47b57a538140
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-15 00:03:12 -0400
Commit message:
Commit: 72ba010b8002230e0a43742afcee47b57a538140
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-15 00:03:12 -0400
Commit message:
Merge pull request #27 from Vitek-Lab/refactoring Refactoring
Package: MSstatsTMT
Commit: af62eb6cfaf947ccc0651a971d1b9eb1455f57a1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-15 00:01:16 -0400
Commit message:
Commit: af62eb6cfaf947ccc0651a971d1b9eb1455f57a1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-15 00:01:16 -0400
Commit message:
remove doc folder
Package: MSstatsTMT
Commit: 78568acde4a79e2c3cea5ee02281e4d35ec9444b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:59:50 -0400
Commit message:
Commit: 78568acde4a79e2c3cea5ee02281e4d35ec9444b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:59:50 -0400
Commit message:
Merge branch 'master' into refactoring
Package: MSstatsTMT
Commit: 370779e555087a43a057802bf81098206910e2c8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:57:00 -0400
Commit message:
Commit: 370779e555087a43a057802bf81098206910e2c8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:57:00 -0400
Commit message:
Delete _pkgdown.yml
Package: MSstatsTMT
Commit: bb33b8f63a8069382d6892e43ffb4a1ecbd75243
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:56:08 -0400
Commit message:
Commit: bb33b8f63a8069382d6892e43ffb4a1ecbd75243
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 23:56:08 -0400
Commit message:
Delete docs directory
Package: MSstatsTMT
Commit: d79861b49f4c70e2491d1f963ab48dbe84565e1f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 22:46:51 -0400
Commit message:
Commit: d79861b49f4c70e2491d1f963ab48dbe84565e1f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 22:46:51 -0400
Commit message:
change MSstatsdev to MSstats
Package: MSstatsTMT
Commit: 5624bf6bda4f793455bae398243bb372fbccb90e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 18:20:03 -0400
Commit message:
Commit: 5624bf6bda4f793455bae398243bb372fbccb90e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 18:20:03 -0400
Commit message:
Merge pull request #26 from Vitek-Lab/dev create pacakage site
Package: MSstatsTMT
Commit: 5dd90dbd6fcca783b3e56999a234d6544d622155
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 12:16:37 -0400
Commit message:
Commit: 5dd90dbd6fcca783b3e56999a234d6544d622155
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-14 12:16:37 -0400
Commit message:
add examples and fix dependancy issue
Package: MSstatsTMT
Commit: 0f4531535e4a3a0a2da406f89f68302915c18d58
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-12 21:16:21 -0400
Commit message:
Commit: 0f4531535e4a3a0a2da406f89f68302915c18d58
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-12 21:16:21 -0400
Commit message:
udpate vignettes and function comments
Package: MSstatsTMT
Commit: 0e76b95f4d59b008bebd11a298b4eda32b553fbd
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-11 23:14:52 -0400
Commit message:
Commit: 0e76b95f4d59b008bebd11a298b4eda32b553fbd
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-11 23:14:52 -0400
Commit message:
Merge branch 'refactoring' of https://github.com/Vitek-Lab/MSstatsTMT into refactoring
Package: MSstatsTMT
Commit: 7e91f5b3e5df0ace4cdffb582b75df448011d9e0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-11 23:14:49 -0400
Commit message:
Commit: 7e91f5b3e5df0ace4cdffb582b75df448011d9e0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-11 23:14:49 -0400
Commit message:
update functions to new output with FeatureLevelData
Package: MSstatsTMT
Commit: 5c7a8110ba96720da73b96b475e26d7115a3f93a
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-12 03:06:01 +0200
Commit message:
Commit: 5c7a8110ba96720da73b96b475e26d7115a3f93a
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-12 03:06:01 +0200
Commit message:
updated site
Package: MSstatsTMT
Commit: b316997a633b3eb0c7009091fa4d38c9e43f4eac
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-12 03:04:05 +0200
Commit message:
Commit: b316997a633b3eb0c7009091fa4d38c9e43f4eac
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-12 03:04:05 +0200
Commit message:
updated exports and docs
Package: MSstatsTMT
Commit: f783f2c09fdec4208457d832242968541fa5a5b2
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 16:39:10 +0200
Commit message:
Commit: f783f2c09fdec4208457d832242968541fa5a5b2
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 16:39:10 +0200
Commit message:
updated names of MSstatsdev output
Package: MSstatsTMT
Commit: 03650b07e79063ecc1ca0fe632dff3c83e0aabf9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 16:34:51 +0200
Commit message:
Commit: 03650b07e79063ecc1ca0fe632dff3c83e0aabf9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 16:34:51 +0200
Commit message:
renamed proteinSummarization output
Package: MSstatsTMT
Commit: 11ac4c435acf6700be4010ded48fcfe3a7c48367
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:05:39 +0200
Commit message:
Commit: 11ac4c435acf6700be4010ded48fcfe3a7c48367
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:05:39 +0200
Commit message:
fixed a typo
Package: MSstatsTMT
Commit: dfe1a2c1fe6b89b0396c83b22978cf0df3ea68c8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:02:54 +0200
Commit message:
Commit: dfe1a2c1fe6b89b0396c83b22978cf0df3ea68c8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:02:54 +0200
Commit message:
candidate fix for summarization issue
Package: MSstatsTMT
Commit: b99a2c96a86d9ebe793e7792a24b7f68fbcfc6f6
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:01:57 +0200
Commit message:
Commit: b99a2c96a86d9ebe793e7792a24b7f68fbcfc6f6
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:01:57 +0200
Commit message:
updated normalization
Package: MSstatsTMT
Commit: 0c7499e468b2d6b06d834a6be6245b38c18f7bca
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:01:36 +0200
Commit message:
Commit: 0c7499e468b2d6b06d834a6be6245b38c18f7bca
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 15:01:36 +0200
Commit message:
candidate fix for problems with summary
Package: MSstatsTMT
Commit: 8c719eed285d2127465ccff8debc661034e620d3
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 02:10:27 +0200
Commit message:
Commit: 8c719eed285d2127465ccff8debc661034e620d3
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-11 02:10:27 +0200
Commit message:
updated logs
Package: MSstatsTMT
Commit: 03fe6c3d86d804fc231e4e561812ac06e5f88321
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-11 00:23:38 +0200
Commit message:
Commit: 03fe6c3d86d804fc231e4e561812ac06e5f88321
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-11 00:23:38 +0200
Commit message:
updated proteinSummarization
Package: MSstatsTMT
Commit: 5f74eb66fd087b6dec9ede20298de2bf9bf57cda
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:53:33 +0200
Commit message:
Commit: 5f74eb66fd087b6dec9ede20298de2bf9bf57cda
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:53:33 +0200
Commit message:
updated groupComparison
Package: MSstatsTMT
Commit: 05dc81546e1102d1cef5cfd4a4a64353e6cddae9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:43:54 +0200
Commit message:
Commit: 05dc81546e1102d1cef5cfd4a4a64353e6cddae9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:43:54 +0200
Commit message:
fixed a typo
Package: MSstatsTMT
Commit: 642f4effe4f95001999bf29adad2140b0a462781
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:30:09 +0200
Commit message:
Commit: 642f4effe4f95001999bf29adad2140b0a462781
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:30:09 +0200
Commit message:
fixed contrast matrix
Package: MSstatsTMT
Commit: dd56e4bc9cead7cdb04dd97cd19bf1d928b03d93
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:27:11 +0200
Commit message:
Commit: dd56e4bc9cead7cdb04dd97cd19bf1d928b03d93
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 21:27:11 +0200
Commit message:
updated normalization
Package: MSstatsTMT
Commit: e39953161a43a23ad5644594cf02f9897d6ef31c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-10 20:57:01 +0200
Commit message:
Commit: e39953161a43a23ad5644594cf02f9897d6ef31c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-10 20:57:01 +0200
Commit message:
update groupComparisonTMT treat some variables as numeric, not matrix
Package: MSstatsTMT
Commit: 8ff778fe6f0cfb070da2227bcb02a1d108584a5f
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 03:10:54 +0200
Commit message:
Commit: 8ff778fe6f0cfb070da2227bcb02a1d108584a5f
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 03:10:54 +0200
Commit message:
renamed to MSstatsdev
Package: MSstatsTMT
Commit: 62287d754d45a4b8dfba40c60f9238ba65370cac
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 03:06:08 +0200
Commit message:
Commit: 62287d754d45a4b8dfba40c60f9238ba65370cac
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 03:06:08 +0200
Commit message:
updated summarization
Package: MSstatsTMT
Commit: 1cbff94548fb78b29555b99374712e0f9b3087b0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-09 19:41:14 -0400
Commit message:
Commit: 1cbff94548fb78b29555b99374712e0f9b3087b0
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-09 19:41:14 -0400
Commit message:
update log info for each run
Package: MSstatsTMT
Commit: b27a235a21f545b99f427fa1aaf34788f67669e5
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:26:45 +0200
Commit message:
Commit: b27a235a21f545b99f427fa1aaf34788f67669e5
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:26:45 +0200
Commit message:
fixed a typo
Package: MSstatsTMT
Commit: 9eae5814c90f6022b16c5763996f0e320f99ae0f
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:22:33 +0200
Commit message:
Commit: 9eae5814c90f6022b16c5763996f0e320f99ae0f
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:22:33 +0200
Commit message:
removed parameter from MsstatsSummarizeTMT
Package: MSstatsTMT
Commit: 64ccc985a94b38e3d5bf425f7c7d9689817317db
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:16:22 +0200
Commit message:
Commit: 64ccc985a94b38e3d5bf425f7c7d9689817317db
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:16:22 +0200
Commit message:
updated logging
Package: MSstatsTMT
Commit: 12776ccb2de4edb08a4d7a7482b579ca0a47bd09
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:10:44 +0200
Commit message:
Commit: 12776ccb2de4edb08a4d7a7482b579ca0a47bd09
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:10:44 +0200
Commit message:
updated logging
Package: MSstatsTMT
Commit: ebaedae1d65b6b30f4a8dfdb7e4aa7161bad4aec
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:10:34 +0200
Commit message:
Commit: ebaedae1d65b6b30f4a8dfdb7e4aa7161bad4aec
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:10:34 +0200
Commit message:
updated docs
Package: MSstatsTMT
Commit: 7bcfdc49da09bf09ff2959ab68fd706c7127f9a9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:03:36 +0200
Commit message:
Commit: 7bcfdc49da09bf09ff2959ab68fd706c7127f9a9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:03:36 +0200
Commit message:
updated logging
Package: MSstatsTMT
Commit: 1644eb6b97bb7f4a33a7d8c57b1225372e47bec9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:01:58 +0200
Commit message:
Commit: 1644eb6b97bb7f4a33a7d8c57b1225372e47bec9
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-10 01:01:58 +0200
Commit message:
updated logging
Package: MSstatsTMT
Commit: b84bd7270b4c2ba3f57d29d208eeca2a6ca2db15
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 23:49:31 +0200
Commit message:
Commit: b84bd7270b4c2ba3f57d29d208eeca2a6ca2db15
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 23:49:31 +0200
Commit message:
fixed log settings
Package: MSstatsTMT
Commit: b3bd9e00ebbc00b2d5a7cbefb99121335a588dc8
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 23:46:42 +0200
Commit message:
Commit: b3bd9e00ebbc00b2d5a7cbefb99121335a588dc8
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 23:46:42 +0200
Commit message:
fixed a typo in log settings
Package: MSstatsTMT
Commit: 04048892ce004331cf571261afc940a912d2c40c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-09 11:36:49 -0400
Commit message:
Commit: 04048892ce004331cf571261afc940a912d2c40c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-09 11:36:49 -0400
Commit message:
update groupComparisonTMT and summarization functions
Package: MSstatsTMT
Commit: ce3a37e0bf2ef229f9de65f69064c5b92a6c6f3e
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 04:10:21 +0200
Commit message:
Commit: ce3a37e0bf2ef229f9de65f69064c5b92a6c6f3e
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-09 04:10:21 +0200
Commit message:
added MSstatsContrastsMatrix call
Package: MSstatsTMT
Commit: 773d11cfa73499e7bacd933c143ce4974a2ea53e
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:37:45 +0200
Commit message:
Commit: 773d11cfa73499e7bacd933c143ce4974a2ea53e
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:37:45 +0200
Commit message:
updated logging in converters
Package: MSstatsTMT
Commit: 51ec7b09dcfe8dff521091b3de301a54827819fe
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:35:49 +0200
Commit message:
Commit: 51ec7b09dcfe8dff521091b3de301a54827819fe
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:35:49 +0200
Commit message:
updated log
Package: MSstatsTMT
Commit: 2bf47fbce1ff0026419684126770fa03109c7149
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:33:32 +0200
Commit message:
Commit: 2bf47fbce1ff0026419684126770fa03109c7149
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-07 22:33:32 +0200
Commit message:
updated log in groupComparisonTMT
Package: MSstatsTMT
Commit: b932a471939646fd0938fe3d371d411845f09649
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-07 17:17:54 +0200
Commit message:
Commit: b932a471939646fd0938fe3d371d411845f09649
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-07 17:17:54 +0200
Commit message:
Update groupComparisonTMT.R
Package: MSstatsTMT
Commit: 57d1c9602dae4ddf03514a38651a0720984e67e8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-07 00:15:13 -0400
Commit message:
Commit: 57d1c9602dae4ddf03514a38651a0720984e67e8
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-07 00:15:13 -0400
Commit message:
Update dataProcessPlotsTMT.R print progress message
Package: MSstatsTMT
Commit: 3fe5768c7ffa35c17bf309a13120bc9e759d207d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-07 00:00:03 -0400
Commit message:
Commit: 3fe5768c7ffa35c17bf309a13120bc9e759d207d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-07 00:00:03 -0400
Commit message:
update function comments
Package: MSstatsTMT
Commit: cdf4dc28932515dc7bfb70b31c6127071e0b676c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-06 23:59:11 -0400
Commit message:
Commit: cdf4dc28932515dc7bfb70b31c6127071e0b676c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-06 23:59:11 -0400
Commit message:
Merge branch 'refactoring' of https://github.com/Vitek-Lab/MSstatsTMT into refactoring
Package: MSstatsTMT
Commit: 62575ccd5d9d41b197041511bb2631e17790436e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-06 23:46:34 -0400
Commit message:
Commit: 62575ccd5d9d41b197041511bb2631e17790436e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-05-06 23:46:34 -0400
Commit message:
update dataprocessplots function
Package: MSstatsTMT
Commit: dfb544d18febb081f570f9221345d05924cda866
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-06 14:17:01 +0200
Commit message:
Commit: dfb544d18febb081f570f9221345d05924cda866
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-06 14:17:01 +0200
Commit message:
updated exports and docs
Package: MSstatsTMT
Commit: cb028416a6a24d4e82efeb74d30a5f2cc1f89de6
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-06 12:44:29 +0200
Commit message:
Commit: cb028416a6a24d4e82efeb74d30a5f2cc1f89de6
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-06 12:44:29 +0200
Commit message:
restored current proteinSummarization version
Package: MSstatsTMT
Commit: 63fdf97ec2721c274d1f5c2d9ec5a653895e2e81
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-05 21:17:22 +0200
Commit message:
Commit: 63fdf97ec2721c274d1f5c2d9ec5a653895e2e81
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-05 21:17:22 +0200
Commit message:
Add files via upload
Package: MSstatsTMT
Commit: 0e65c2ac339b38a87b4986891c3ed03e1307b995
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-05 21:16:38 +0200
Commit message:
Commit: 0e65c2ac339b38a87b4986891c3ed03e1307b995
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2021-05-05 21:16:38 +0200
Commit message:
Delete dataProcessPlotsTMT.R
Package: MSstatsTMT
Commit: a2cc9b2e77411b6298acb65f325b7670e5594119
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:46:11 +0200
Commit message:
Commit: a2cc9b2e77411b6298acb65f325b7670e5594119
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:46:11 +0200
Commit message:
updated docs
Package: MSstatsTMT
Commit: 1a6cc95ec5f4b6a9edd544063f139c49721a51b5
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:46:01 +0200
Commit message:
Commit: 1a6cc95ec5f4b6a9edd544063f139c49721a51b5
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:46:01 +0200
Commit message:
updated proteinSummarization
Package: MSstatsTMT
Commit: 4a90f0c463114575c423cc96d532b510ecf73234
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:44:48 +0200
Commit message:
Commit: 4a90f0c463114575c423cc96d532b510ecf73234
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:44:48 +0200
Commit message:
updated groupComparison
Package: MSstatsTMT
Commit: d030c0eec6b117564ae871d13b8f0e9cbf8cb230
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:43:55 +0200
Commit message:
Commit: d030c0eec6b117564ae871d13b8f0e9cbf8cb230
Author: mstaniak <mtst@mstaniak.pl>
Date: 2021-05-04 17:43:55 +0200
Commit message:
updated plots
Package: MSstatsTMT
Commit: 29b18af70aca5edaa21c8cd0aa1d939d519e2bdf
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-30 12:44:11 -0400
Commit message:
Commit: 29b18af70aca5edaa21c8cd0aa1d939d519e2bdf
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-30 12:44:11 -0400
Commit message:
create pacakage site
Package: MSstatsTMT
Commit: b34d7a73d19e24256ea46da4e6cb05771f9f124e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-29 00:28:44 -0400
Commit message:
Commit: b34d7a73d19e24256ea46da4e6cb05771f9f124e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-29 00:28:44 -0400
Commit message:
Merge pull request #25 from Vitek-Lab/dev fix the contrast matrix bug
Package: MSstatsTMT
Commit: c78b7133c957c6af49ca1ead39f5041455159511
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-29 00:26:32 -0400
Commit message:
Commit: c78b7133c957c6af49ca1ead39f5041455159511
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2021-04-29 00:26:32 -0400
Commit message:
fix the contrast matrix bug
Package: MSstatsTMT
Commit: 7872b439fed3eae23330d8eda25b5a54c4d1254b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:31:57 -0500
Commit message:
Commit: 7872b439fed3eae23330d8eda25b5a54c4d1254b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:31:57 -0500
Commit message:
Merge pull request #21 from Vitek-Lab/dev update groupComparsionTMT() and description file
Package: MSstatsTMT
Commit: 8ed8e947178561a416d49bfab54f52a38e010e51
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:30:45 -0500
Commit message:
Commit: 8ed8e947178561a416d49bfab54f52a38e010e51
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:30:45 -0500
Commit message:
update description file
Package: MSstatsTMT
Commit: 5b10d8ff14e6ce87fe070983ab2748eacadb3060
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:17:06 -0500
Commit message:
Commit: 5b10d8ff14e6ce87fe070983ab2748eacadb3060
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 23:17:06 -0500
Commit message:
udpate groupComparsionTMT()
Package: MSstatsTMT
Commit: 8851a3c77adad71d7a7ec2ec5d3c1cba95490293
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 18:25:56 -0500
Commit message:
Commit: 8851a3c77adad71d7a7ec2ec5d3c1cba95490293
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-17 18:25:56 -0500
Commit message:
Merge pull request #20 from Vitek-Lab/minor-update update progress bar
Package: MSstatsTMT
Commit: 6d189b6109e323803b8988c3f4f40ca20bf264eb
Author: Meena Choi <choimeena.ijae@gmail.com>
Date: 2020-12-15 14:11:49 -0500
Commit message:
Commit: 6d189b6109e323803b8988c3f4f40ca20bf264eb
Author: Meena Choi <choimeena.ijae@gmail.com>
Date: 2020-12-15 14:11:49 -0500
Commit message:
update progress bar
Package: MSstatsTMT
Commit: 49416ac2eb09a7918c018b9c213dfbd4989d5022
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-10 14:42:51 -0500
Commit message:
Commit: 49416ac2eb09a7918c018b9c213dfbd4989d5022
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-10 14:42:51 -0500
Commit message:
Merge pull request #19 from Vitek-Lab/dev Fix typo in function annotation and add citation file
Package: MSstatsTMT
Commit: 96cd7233160d3a5d877c620920f46a372d25fd35
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-10 14:41:12 -0500
Commit message:
Commit: 96cd7233160d3a5d877c620920f46a372d25fd35
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-12-10 14:41:12 -0500
Commit message:
Fix typo in function annotation and add citation file
Package: MSstatsTMT
Commit: a8dbd64934477deb01916e69c6e4cbb0facf7829
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 17:10:42 -0400
Commit message:
Commit: a8dbd64934477deb01916e69c6e4cbb0facf7829
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 17:10:42 -0400
Commit message:
Merge pull request #18 from Vitek-Lab/dev Update linearModel.functions.R
Package: MSstatsTMT
Commit: df689e65304e1adb93bf62670f4ca93fd642807f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 17:09:18 -0400
Commit message:
Commit: df689e65304e1adb93bf62670f4ca93fd642807f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 17:09:18 -0400
Commit message:
Update linearModel.functions.R
Package: MSstatsTMT
Commit: f484504185535e76728acf68c07d371d1f24e5c4
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 15:10:46 -0400
Commit message:
Commit: f484504185535e76728acf68c07d371d1f24e5c4
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 15:10:46 -0400
Commit message:
Merge pull request #17 from Vitek-Lab/dev fix bug in medianpolish summarization
Package: MSstatsTMT
Commit: d80c64494c8455f9a602eeaec245763a5bec2751
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 15:08:37 -0400
Commit message:
Commit: d80c64494c8455f9a602eeaec245763a5bec2751
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-26 15:08:37 -0400
Commit message:
fix bug in medianpolish summarization
Package: MSstatsTMT
Commit: d9cde1e6d5b5afbaf03c7eee7867668f5dc5cf64
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 23:29:42 +0200
Commit message:
Commit: d9cde1e6d5b5afbaf03c7eee7867668f5dc5cf64
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 23:29:42 +0200
Commit message:
restores the .summarizeSimpleStat function
Package: MSstatsTMT
Commit: 394a0bbf8ebc0253f9365aef92fef3e66bc9b754
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 20:42:07 +0200
Commit message:
Commit: 394a0bbf8ebc0253f9365aef92fef3e66bc9b754
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 20:42:07 +0200
Commit message:
converts 0 to NA before normalization
Package: MSstatsTMT
Commit: 7d0ac829cf355d9cbc72e8098658cf02ba9e0e33
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 15:32:26 +0200
Commit message:
Commit: 7d0ac829cf355d9cbc72e8098658cf02ba9e0e33
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-20 15:32:26 +0200
Commit message:
temporarily splits peptide normalization in two steps
Package: MSstatsTMT
Commit: 3ec23516fec45d980d919346e5385272b62390f9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-19 00:20:27 +0200
Commit message:
Commit: 3ec23516fec45d980d919346e5385272b62390f9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-19 00:20:27 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: 6b8f4e429e66bd69e16cbfb832368472b4f1b61d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 21:11:18 +0200
Commit message:
Commit: 6b8f4e429e66bd69e16cbfb832368472b4f1b61d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 21:11:18 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: 024df9e63b4753a5383aadb1db850aa7fb1dc9be
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 18:54:07 +0200
Commit message:
Commit: 024df9e63b4753a5383aadb1db850aa7fb1dc9be
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 18:54:07 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: eea8490ead3e18e86aa31cf494f871d2a36eb360
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 00:52:44 +0200
Commit message:
Commit: eea8490ead3e18e86aa31cf494f871d2a36eb360
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-18 00:52:44 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: d5aafcf36ffbc3b52defa3d92116f33bf31c73e9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 21:07:55 +0200
Commit message:
Commit: d5aafcf36ffbc3b52defa3d92116f33bf31c73e9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 21:07:55 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: c5358eac0fac0bad76f0323e63f0622136c2a01b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:50:58 +0200
Commit message:
Commit: c5358eac0fac0bad76f0323e63f0622136c2a01b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:50:58 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: 69eaaf717f5af61c17efa096012d999dab701bef
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:47:52 +0200
Commit message:
Commit: 69eaaf717f5af61c17efa096012d999dab701bef
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:47:52 +0200
Commit message:
removes subset from normalization
Package: MSstatsTMT
Commit: c4c226f72c48650fbb19dbc77483e4b1c0779cb1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:38:02 +0200
Commit message:
Commit: c4c226f72c48650fbb19dbc77483e4b1c0779cb1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:38:02 +0200
Commit message:
updates median polish summarization
Package: MSstatsTMT
Commit: b535bc286e383f1f68325de3dc6e394247e77710
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:32:59 +0200
Commit message:
Commit: b535bc286e383f1f68325de3dc6e394247e77710
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-17 18:32:59 +0200
Commit message:
updates normalization
Package: MSstatsTMT
Commit: 605031dc035234562c77514ac8a7208da4636725
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-16 20:46:07 +0200
Commit message:
Commit: 605031dc035234562c77514ac8a7208da4636725
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-16 20:46:07 +0200
Commit message:
updates gitignore
Package: MSstatsTMT
Commit: ee9ccf17c1567faa7c84ade74ab155d0c535ead1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-16 20:44:28 +0200
Commit message:
Commit: ee9ccf17c1567faa7c84ade74ab155d0c535ead1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-16 20:44:28 +0200
Commit message:
adds na.rm to uniqueN for counting runs
Package: MSstatsTMT
Commit: b16286c5db73745c9e0d155fb37f2f37b9527bd9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-15 16:49:04 +0200
Commit message:
Commit: b16286c5db73745c9e0d155fb37f2f37b9527bd9
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-15 16:49:04 +0200
Commit message:
removes filtering from median polish summarization
Package: MSstatsTMT
Commit: cc6bf12a536f7557148bef04b37ce448f8f6d484
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 19:08:02 +0200
Commit message:
Commit: cc6bf12a536f7557148bef04b37ce448f8f6d484
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 19:08:02 +0200
Commit message:
fixes error in MSstats summarization
Package: MSstatsTMT
Commit: 8b448a533c596db4a93f1a08184280880b26fdb1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 18:46:04 +0200
Commit message:
Commit: 8b448a533c596db4a93f1a08184280880b26fdb1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 18:46:04 +0200
Commit message:
fixes error for data.frame input
Package: MSstatsTMT
Commit: abfc1671549a671416f59e2055f8b6a9228d2aab
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 16:36:46 +0200
Commit message:
Commit: abfc1671549a671416f59e2055f8b6a9228d2aab
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 16:36:46 +0200
Commit message:
updates summarization with median polish
Package: MSstatsTMT
Commit: 0ea3abb8dc694df313f0fd6d2941564ac7f2a202
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 16:12:09 +0200
Commit message:
Commit: 0ea3abb8dc694df313f0fd6d2941564ac7f2a202
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 16:12:09 +0200
Commit message:
typo fix
Package: MSstatsTMT
Commit: a27734e27b0961ef13acb25332fe28da0586b938
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 15:58:15 +0200
Commit message:
Commit: a27734e27b0961ef13acb25332fe28da0586b938
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 15:58:15 +0200
Commit message:
fixes summarization
Package: MSstatsTMT
Commit: d2edae8a1d0e5c66f76bb683b0c698fc74cb5bcb
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 15:42:54 +0200
Commit message:
Commit: d2edae8a1d0e5c66f76bb683b0c698fc74cb5bcb
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-14 15:42:54 +0200
Commit message:
fixes a typo in MSstats summarization
Package: MSstatsTMT
Commit: f850db73ca35f6c8bb2095684a8c400487165635
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 18:59:20 +0200
Commit message:
Commit: f850db73ca35f6c8bb2095684a8c400487165635
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 18:59:20 +0200
Commit message:
adds as.data.frame
Package: MSstatsTMT
Commit: 99db2c19673a1d5d0aac3e8a8a42c30eb991a28a
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:20:40 -0400
Commit message:
Commit: 99db2c19673a1d5d0aac3e8a8a42c30eb991a28a
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:20:40 -0400
Commit message:
Merge pull request #16 from Vitek-Lab/dev fix a typo in function comments
Package: MSstatsTMT
Commit: 4890c089dc337457f1a935b95f65fdc76ac3e26e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:41 -0400
Commit message:
Commit: 4890c089dc337457f1a935b95f65fdc76ac3e26e
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:41 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: 0c83a2f09422959f11b742d266c6734898e5d682
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:29 -0400
Commit message:
Commit: 0c83a2f09422959f11b742d266c6734898e5d682
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:29 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: d1a86bd9587ff7d715a7d10b493e7b1474078078
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:00 -0400
Commit message:
Commit: d1a86bd9587ff7d715a7d10b493e7b1474078078
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:18:00 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: e511639ef3f3520f09c1f88287d0b943d0aae2c9
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:17:26 -0400
Commit message:
Commit: e511639ef3f3520f09c1f88287d0b943d0aae2c9
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:17:26 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: 1778e949dd3fb66f52d2666ce0d2abbf212ac91f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:16:48 -0400
Commit message:
Commit: 1778e949dd3fb66f52d2666ce0d2abbf212ac91f
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:16:48 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: 4524deaae91755bced1f1f607afa651120cb5300
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:16:34 -0400
Commit message:
Commit: 4524deaae91755bced1f1f607afa651120cb5300
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:16:34 -0400
Commit message:
Delete .DS_Store
Package: MSstatsTMT
Commit: aa10d00163bc73c369d4ba82f13ecb3f7d64ed65
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:14:21 -0400
Commit message:
Commit: aa10d00163bc73c369d4ba82f13ecb3f7d64ed65
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-10-13 12:14:21 -0400
Commit message:
fix a typo in function comments
Package: MSstatsTMT
Commit: fc67448bd372671b37c5df1a3b8fcb449e057cfe
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 02:10:44 +0200
Commit message:
Commit: fc67448bd372671b37c5df1a3b8fcb449e057cfe
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 02:10:44 +0200
Commit message:
updates calls to dataProcess
Package: MSstatsTMT
Commit: 870ce1837a2dde5e0c4ad216304406544c8f57fd
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 01:55:28 +0200
Commit message:
Commit: 870ce1837a2dde5e0c4ad216304406544c8f57fd
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-13 01:55:28 +0200
Commit message:
updates call to dataProcess
Package: MSstatsTMT
Commit: c696a084571a4821989b92d9543f197fbe8d5e38
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:28 +0200
Commit message:
Commit: c696a084571a4821989b92d9543f197fbe8d5e38
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:28 +0200
Commit message:
adds a final message to converters
Package: MSstatsTMT
Commit: 262f5bdadd49c12bbbc5908c79d316c82cdf1fa0
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:20 +0200
Commit message:
Commit: 262f5bdadd49c12bbbc5908c79d316c82cdf1fa0
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:20 +0200
Commit message:
removes make_copy parameter
Package: MSstatsTMT
Commit: 5d07342be272ced8c8f2b3a4b06f56ab12688d1c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:11 +0200
Commit message:
Commit: 5d07342be272ced8c8f2b3a4b06f56ab12688d1c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 23:10:11 +0200
Commit message:
re-organizes summarization code
Package: MSstatsTMT
Commit: cdf2fc26b98951a877be8039477f5254b4733077
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:23:35 +0200
Commit message:
Commit: cdf2fc26b98951a877be8039477f5254b4733077
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:23:35 +0200
Commit message:
adds MSstatsdev to Imports
Package: MSstatsTMT
Commit: d570a97b54e52ee55b7422008c8aa72c1b5c0fd8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:18:58 +0200
Commit message:
Commit: d570a97b54e52ee55b7422008c8aa72c1b5c0fd8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:18:58 +0200
Commit message:
removes unnecessary parameters
Package: MSstatsTMT
Commit: d2ab3e9cffd727bedaa350624a9ebd672cb601d6
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:12:01 +0200
Commit message:
Commit: d2ab3e9cffd727bedaa350624a9ebd672cb601d6
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:12:01 +0200
Commit message:
adds saving session info to proteinSummarization
Package: MSstatsTMT
Commit: 91f1ecbe51f08610f4d5d352148fbc1115593b3d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:09:21 +0200
Commit message:
Commit: 91f1ecbe51f08610f4d5d352148fbc1115593b3d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 21:09:21 +0200
Commit message:
adds make_copy parameter to proteinSummarization
Package: MSstatsTMT
Commit: 0363135d926bb77945a03811139d0f8150492ded
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 20:46:53 +0200
Commit message:
Commit: 0363135d926bb77945a03811139d0f8150492ded
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-12 20:46:53 +0200
Commit message:
re-organizes proteinSummarization code
Package: MSstatsTMT
Commit: fa87d6b15864809d2c0fc1583ed17ee3f6bdc4c8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-02 16:39:27 +0200
Commit message:
Commit: fa87d6b15864809d2c0fc1583ed17ee3f6bdc4c8
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-10-02 16:39:27 +0200
Commit message:
updates converters
Package: MSstatsTMT
Commit: b32fe2e74f2d0ad53271c37b7ba190a662fc08f1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-30 00:58:01 +0200
Commit message:
Commit: b32fe2e74f2d0ad53271c37b7ba190a662fc08f1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-30 00:58:01 +0200
Commit message:
adds MSstatsConvert:: to imported functions
Package: MSstatsTMT
Commit: c31300ad85a0f86f93832091efee7a07816dc51c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-30 00:07:06 +0200
Commit message:
Commit: c31300ad85a0f86f93832091efee7a07816dc51c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-30 00:07:06 +0200
Commit message:
updates converters
Package: MSstatsTMT
Commit: 27f766a776c43e30691a16a4cbc48ed25c26c937
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 23:46:26 +0200
Commit message:
Commit: 27f766a776c43e30691a16a4cbc48ed25c26c937
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 23:46:26 +0200
Commit message:
fixes bug in converters
Package: MSstatsTMT
Commit: 9a5567cbc0bcc0276ccfd438eae0bf4ebdedbe54
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:39:00 +0200
Commit message:
Commit: 9a5567cbc0bcc0276ccfd438eae0bf4ebdedbe54
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:39:00 +0200
Commit message:
updates logging in converters
Package: MSstatsTMT
Commit: 4437ae5297a34b71eb1cae875d91e8bbeed53e5b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:19:16 +0200
Commit message:
Commit: 4437ae5297a34b71eb1cae875d91e8bbeed53e5b
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:19:16 +0200
Commit message:
adds saving session info
Package: MSstatsTMT
Commit: c366818ffe1d62486457f38c7209a280ac7ab0e4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:19:00 +0200
Commit message:
Commit: c366818ffe1d62486457f38c7209a280ac7ab0e4
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:19:00 +0200
Commit message:
updates docs
Package: MSstatsTMT
Commit: c02c4ca9350e5a7aa41ac55c1120b80e335b53c1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:18:20 +0200
Commit message:
Commit: c02c4ca9350e5a7aa41ac55c1120b80e335b53c1
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-29 22:18:20 +0200
Commit message:
updates imports and namespace temporarily removes function
Package: MSstatsTMT
Commit: 06d241036093364fa7f57387318c8d49a3f18961
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:40:47 +0200
Commit message:
Commit: 06d241036093364fa7f57387318c8d49a3f18961
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:40:47 +0200
Commit message:
adds codecov
Package: MSstatsTMT
Commit: 132b7533495b74ea6d699d3a2ec3b27ac0c3126c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:37:21 +0200
Commit message:
Commit: 132b7533495b74ea6d699d3a2ec3b27ac0c3126c
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:37:21 +0200
Commit message:
adds Travis
Package: MSstatsTMT
Commit: 95dcfdd8e9abbaffe4bd6945bbe63a21e81d6ea7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:04:07 +0200
Commit message:
Commit: 95dcfdd8e9abbaffe4bd6945bbe63a21e81d6ea7
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2020-09-26 13:04:07 +0200
Commit message:
adds converter from MSstatsConvert
Package: MSstatsTMT
Commit: 805a4cc3ed68a39c3733e077f32899e02594e8dc
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 19:31:51 -0400
Commit message:
Commit: 805a4cc3ed68a39c3733e077f32899e02594e8dc
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 19:31:51 -0400
Commit message:
Merge pull request #11 from Vitek-Lab/dev Fix bugs in converters
Package: MSstatsTMT
Commit: f439620e43183ede4438fa466b0965abfac2102c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 19:29:56 -0400
Commit message:
Commit: f439620e43183ede4438fa466b0965abfac2102c
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 19:29:56 -0400
Commit message:
Fix the bug in converters due to fractions with same mean, sum and max values
Package: MSstatsTMT
Commit: d2e0f9bed4dc591ad944bf1bd898cb641eee3614
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:28:34 -0400
Commit message:
Commit: d2e0f9bed4dc591ad944bf1bd898cb641eee3614
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:28:34 -0400
Commit message:
Delete .gitignore
Package: MSstatsTMT
Commit: 6a2af9236e4df919577cc06345b80d17f0efd0bd
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:28:20 -0400
Commit message:
Commit: 6a2af9236e4df919577cc06345b80d17f0efd0bd
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:28:20 -0400
Commit message:
Delete .Rbuildignore
Package: MSstatsTMT
Commit: 4a7da658f2cff218d11604647c1424b0958dd952
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:20:57 -0400
Commit message:
Commit: 4a7da658f2cff218d11604647c1424b0958dd952
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-28 17:20:57 -0400
Commit message:
fix the bug in converters the bug is due to summaryforMultipleRows
Package: MSstatsTMT
Commit: 604272dafdb3881a95601a37f84d0d89b26a2d15
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-24 10:39:00 -0400
Commit message:
Commit: 604272dafdb3881a95601a37f84d0d89b26a2d15
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-08-24 10:39:00 -0400
Commit message:
fix duplicated row bug in openms converter
Package: MSstatsTMT
Commit: f4141c31e45f0510d927a35d9bd421ff014ae816
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-06-10 19:02:32 -0400
Commit message:
Commit: f4141c31e45f0510d927a35d9bd421ff014ae816
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-06-10 19:02:32 -0400
Commit message:
allow NA in annotation file
Package: MSstatsTMT
Commit: 0840222442677b61a8172e57428ae272a767b454
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-06-02 23:23:29 -0400
Commit message:
Commit: 0840222442677b61a8172e57428ae272a767b454
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-06-02 23:23:29 -0400
Commit message:
improve groupComparison() to predict for each protein
Package: MSstatsTMT
Commit: 6b84c3694c0e5edd4a4e8a33a2f47ebc631f34d2
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-04-24 07:06:57 -0400
Commit message:
Commit: 6b84c3694c0e5edd4a4e8a33a2f47ebc631f34d2
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-04-24 07:06:57 -0400
Commit message:
update version number
Package: MSstatsTMT
Commit: 4e8b69d1746ede34e622c97148fb3079907d1aa1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-04-14 08:43:15 -0400
Commit message:
Commit: 4e8b69d1746ede34e622c97148fb3079907d1aa1
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-04-14 08:43:15 -0400
Commit message:
use lmertest for testing
Package: MSstatsTMT
Commit: 681035fedf038661281923c40faaa77f865b5702
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-03-01 16:19:45 -0500
Commit message:
Commit: 681035fedf038661281923c40faaa77f865b5702
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2020-03-01 16:19:45 -0500
Commit message:
add OpenMStoMSstatsTMTFormat()
Package: MSstatsTMT
Commit: 614e7588a6fed38e6d2511323a71d4c483d5d0bc
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-12-28 22:26:21 -0500
Commit message:
Commit: 614e7588a6fed38e6d2511323a71d4c483d5d0bc
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-12-28 22:26:21 -0500
Commit message:
fix bug in groupComparison() very few measurement previously doesn't work
Package: MSstatsTMT
Commit: dc6eb7d973ec850e90f5abae006732303a16e591
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-12-20 11:32:08 -0500
Commit message:
Commit: dc6eb7d973ec850e90f5abae006732303a16e591
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-12-20 11:32:08 -0500
Commit message:
Add issue column
Package: MSstatsTMT
Commit: a656bdac148e4540cb28ba69cff3926144532338
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-11-06 11:24:20 -0500
Commit message:
Commit: a656bdac148e4540cb28ba69cff3926144532338
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-11-06 11:24:20 -0500
Commit message:
seq_along update
Package: MSstatsTMT
Commit: ac154383a03ebd353f4a06e55790aaedf83f522b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-10-31 16:26:17 -0400
Commit message:
Commit: ac154383a03ebd353f4a06e55790aaedf83f522b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-10-31 16:26:17 -0400
Commit message:
update PD converter for different version
Package: MSstatsTMT
Commit: 269327b495f3afb6e18056d469e4ad3dfae1934d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-08-15 10:05:59 -0400
Commit message:
Commit: 269327b495f3afb6e18056d469e4ad3dfae1934d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-08-15 10:05:59 -0400
Commit message:
revise the case for anova has no subject term
Package: MSstatsTMT
Commit: d2e5616ecadb3cf9a58e1fc17d9eeb0accd7877b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-08-08 10:06:36 -0400
Commit message:
Commit: d2e5616ecadb3cf9a58e1fc17d9eeb0accd7877b
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-08-08 10:06:36 -0400
Commit message:
Fix bug in contrast comparison
Package: MSstatsTMT
Commit: dede5bfdda0294c375386ea86ff283a33096666d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-07-31 02:04:05 -0400
Commit message:
Commit: dede5bfdda0294c375386ea86ff283a33096666d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-07-31 02:04:05 -0400
Commit message:
fit bug in contrast comparison
Package: MSstatsTMT
Commit: 18ef6721db341775c65307e73f4bc4975a334a88
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-07-28 15:41:39 -0400
Commit message:
Commit: 18ef6721db341775c65307e73f4bc4975a334a88
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-07-28 15:41:39 -0400
Commit message:
Global median normalization
Package: MSstatsTMT
Commit: 3b4fca433f1bdffb8050e15cd109acbe8be27e7d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-06-13 20:54:03 -0400
Commit message:
Commit: 3b4fca433f1bdffb8050e15cd109acbe8be27e7d
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-06-13 20:54:03 -0400
Commit message:
fix for empty channel
Package: MSstatsTMT
Commit: 196206cc5c2c42b1bb0af4f5d4ff752602b709ab
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-06-02 17:16:21 -0400
Commit message:
Commit: 196206cc5c2c42b1bb0af4f5d4ff752602b709ab
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-06-02 17:16:21 -0400
Commit message:
update the statistical models
Package: MSstatsTMT
Commit: 4efe820e9e0b381de350b559175c53f5b93f9786
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-05-03 17:18:33 -0400
Commit message:
Commit: 4efe820e9e0b381de350b559175c53f5b93f9786
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-05-03 17:18:33 -0400
Commit message:
Update to version 1.2
Package: MSstatsTMT
Commit: ca7d4b368e5ae7cf22364a7de1769fb5811cc1c3
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-02-07 20:39:45 -0500
Commit message:
Commit: ca7d4b368e5ae7cf22364a7de1769fb5811cc1c3
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-02-07 20:39:45 -0500
Commit message:
Update of package data and fix error in testthat
Package: MSstatsTMT
Commit: 43d5075c25cc26f102984f2544a3b62cf7b7d570
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-02-06 20:44:06 -0500
Commit message:
Commit: 43d5075c25cc26f102984f2544a3b62cf7b7d570
Author: Ting Huang <huang.tin@husky.neu.edu>
Date: 2019-02-06 20:44:06 -0500
Commit message:
Fix the bugs in normalization functions and converters
Package: DECIPHER
Commit: b5cb6b217ae4db3c74cee24d741caabe98555e96
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:53:14 -0700
Commit message:
Commit: b5cb6b217ae4db3c74cee24d741caabe98555e96
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:53:14 -0700
Commit message:
Also need to add import(pwalign) to NAMESPACE
Package: DECIPHER
Commit: 00f4191467cc4851fcd9e5673b4096683d1db33d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:46:13 -0700
Commit message:
Commit: 00f4191467cc4851fcd9e5673b4096683d1db33d
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:46:13 -0700
Commit message:
Add new package pwalign to Depends
Package: DeepTarget
Commit: c151b95a6d22e390e02749980f71e4896b488ce1
Author: CBIIT-CGBB <yhu@mail.nih.gov>
Date: 2024-04-23 11:14:21 -0400
Commit message:
Commit: c151b95a6d22e390e02749980f71e4896b488ce1
Author: CBIIT-CGBB <yhu@mail.nih.gov>
Date: 2024-04-23 11:14:21 -0400
Commit message:
Fixing errors generating from build report
Package: DeepTarget
Commit: 303808d5e0a840fc3384f4f84973cc115c80bb07
Author: CBIIT-CGBB <yhu@mail.nih.gov>
Date: 2024-04-23 09:39:28 -0400
Commit message:
Commit: 303808d5e0a840fc3384f4f84973cc115c80bb07
Author: CBIIT-CGBB <yhu@mail.nih.gov>
Date: 2024-04-23 09:39:28 -0400
Commit message:
updating version from 0.99.18 to 0.99.19 to fix error Biobase,BiocGenerics, BiocParallel, Biobase during the build
Package: Biostrings
Commit: 6077a89dfe7cb9dd1fd35e3f0116e9da36d2f48b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:01:46 -0700
Commit message:
Commit: 6077a89dfe7cb9dd1fd35e3f0116e9da36d2f48b
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2024-04-23 09:01:46 -0700
Commit message:
Move graphics from Imports to Suggests Also: - Add Wolfgang Huber as a contributor ('matchprobes' vignette) - Remove 'LazyLoad: yes' from DESCRIPTION file - Remove methods from Depends
Package: SQLDataFrame
Commit: 0f8da58dce5011bc72acbd927d73ede8c0859cc3
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:32:47 -0400
Commit message:
Commit: 0f8da58dce5011bc72acbd927d73ede8c0859cc3
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:32:47 -0400
Commit message:
Fix NEWS - sections cannot be freeform must be items
Package: methyLImp2
Commit: 013951c5c4172bcee15c4e52f40408364c7b504f
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:29:45 -0400
Commit message:
Commit: 013951c5c4172bcee15c4e52f40408364c7b504f
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:29:45 -0400
Commit message:
Fix NEWS - formatting all sections must be lists not freeform
Package: DMRcate
Commit: df5c033bb0c3b4d711958d57efe0c27adcd08222
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:26:06 -0400
Commit message:
Commit: df5c033bb0c3b4d711958d57efe0c27adcd08222
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2024-04-23 11:26:06 -0400
Commit message:
Fix NEWS formatting - Sections must have items and cannot be freeform
Package: qpgraph
Commit: 1ea3a246145d9bbcf9504560e0bb949f2bb5e132
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-23 17:06:47 +0200
Commit message:
Commit: 1ea3a246145d9bbcf9504560e0bb949f2bb5e132
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2024-04-23 17:06:47 +0200
Commit message:
Fixed a warning on the C code
Package: limpca
Commit: 51ce88c10ee651acc85d15c29c39e7d012adf718
Author: Manon Martin <manmartin@mac-1T0-170.local>
Date: 2024-04-23 16:46:11 +0200
Commit message:
Commit: 51ce88c10ee651acc85d15c29c39e7d012adf718
Author: Manon Martin <manmartin@mac-1T0-170.local>
Date: 2024-04-23 16:46:11 +0200
Commit message:
removed GitHub installation instructions
Package: GenomicPlot
Commit: bb61d76199960fd5f30f4e6910966aa485b4d251
Author: Shuye Pu <shuye2009@gmail.com>
Date: 2024-04-23 10:24:35 -0400
Commit message:
Commit: bb61d76199960fd5f30f4e6910966aa485b4d251
Author: Shuye Pu <shuye2009@gmail.com>
Date: 2024-04-23 10:24:35 -0400
Commit message:
Bug fix in plot_region
Package: methodical
Commit: 6485df8dfc182a9fa68ca256d16fef01c8c54a74
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-23 16:21:45 +0200
Commit message:
Commit: 6485df8dfc182a9fa68ca256d16fef01c8c54a74
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-23 16:21:45 +0200
Commit message:
Bumped version
Package: methodical
Commit: 0a6b29bca063f3b02152a10fc0afaaf60cb84cb3
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-23 16:21:02 +0200
Commit message:
Commit: 0a6b29bca063f3b02152a10fc0afaaf60cb84cb3
Author: richardheery <richardheery@gmail.com>
Date: 2024-04-23 16:21:02 +0200
Commit message:
Removed dependency on TCGAbiolinks
Package: mosdef
Commit: 18aa812e52d136ffcd131d299b6f9f3a4c9c2380
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 14:18:18 +0200
Commit message:
Commit: 18aa812e52d136ffcd131d299b6f9f3a4c9c2380
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 14:18:18 +0200
Commit message:
Merge pull request #14 from imbeimainz/extra_docs Extra documentation info
Package: mosdef
Commit: e9af0e9676c316e27516efeb646227356d903350
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:51:33 +0200
Commit message:
Commit: e9af0e9676c316e27516efeb646227356d903350
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:51:33 +0200
Commit message:
updated NEWS
Package: mosdef
Commit: 023add071babafe12c892bff7538ff737f5ae01f
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:35 +0200
Commit message:
Commit: 023add071babafe12c892bff7538ff737f5ae01f
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:35 +0200
Commit message:
version bump, 0.99.4
Package: mosdef
Commit: 1a7d82f1478407747ab86c707da8455ac853fb9a
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:25 +0200
Commit message:
Commit: 1a7d82f1478407747ab86c707da8455ac853fb9a
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:25 +0200
Commit message:
re-rendering man pages for the data objects
Package: mosdef
Commit: d07baea6129bc7fb3daae16254a617659e14e110
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:12 +0200
Commit message:
Commit: d07baea6129bc7fb3daae16254a617659e14e110
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:12 +0200
Commit message:
add info on script location also in the vignette
Package: mosdef
Commit: 2a7f3f3e3a135e1b7f5e3443056b91c8c6093ec3
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:00 +0200
Commit message:
Commit: 2a7f3f3e3a135e1b7f5e3443056b91c8c6093ec3
Author: Federico Marini <marinif@uni-mainz.de>
Date: 2024-04-23 10:50:00 +0200
Commit message:
specify information on the scripts to create the individual data objects - location and url now are included in the @source tag
Package: edgeR
Commit: 9d43f9b426809563d29a4fbb12ac737bcee516c9
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 22:45:20 +1000
Commit message:
Commit: 9d43f9b426809563d29a4fbb12ac737bcee516c9
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 22:45:20 +1000
Commit message:
edgeR 4.1.25 - Consolidate camera.DGEList.Rd and camera.DGEGLM.Rd into one file.
Package: msa
Commit: e35af62b4f6490df3836d7ddc4e6304654623d39
Author: UBod <ulrich@bodenhofer.com>
Date: 2024-04-23 14:28:17 +0200
Commit message:
Commit: e35af62b4f6490df3836d7ddc4e6304654623d39
Author: UBod <ulrich@bodenhofer.com>
Date: 2024-04-23 14:28:17 +0200
Commit message:
Change of maintainer e-mail address and website; change of format of vignette; version number bumped to 1.35.2
Package: MAPFX
Commit: 4a1669f71191ca6deaeaf2c44a8446f72d7121ed
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 22:39:51 +1000
Commit message:
Commit: 4a1669f71191ca6deaeaf2c44a8446f72d7121ed
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 22:39:51 +1000
Commit message:
version 0.99.6-for3ndReview-narrowingLinesRd
Package: edgeR
Commit: ae2bb7c71aa8d1913687777dcc85164836bd19b9
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 22:23:47 +1000
Commit message:
Commit: ae2bb7c71aa8d1913687777dcc85164836bd19b9
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 22:23:47 +1000
Commit message:
edgeR 4.1.24 - New argument `adaptive.span` for voomLmFit(). - Update links to statsci.org/smyth with gksmyth.github.io.
Package: MAPFX
Commit: 70b2a07b825893c6c9f2fb91d2900f85b3111baf
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 22:13:50 +1000
Commit message:
Commit: 70b2a07b825893c6c9f2fb91d2900f85b3111baf
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 22:13:50 +1000
Commit message:
version 0.99.5-for3ndReview-fixTIMEOUT
Package: igvShiny
Commit: 9674efee03cd5eebfafc81dff1f9348ee929681d
Author: Arek Gladki <41166437+gladkia@users.noreply.github.com>
Date: 2024-04-23 13:46:16 +0200
Commit message:
Commit: 9674efee03cd5eebfafc81dff1f9348ee929681d
Author: Arek Gladki <41166437+gladkia@users.noreply.github.com>
Date: 2024-04-23 13:46:16 +0200
Commit message:
Merge pull request #77 from gladkia/76-problem-running-with-local-files feat: change file links from igv-data.systemsbiology.net to gladki.pl…
Package: igvShiny
Commit: bdc73d99e5fcf3b61108ef1baac184b9698a8a39
Author: Arkadiusz Gladki <arkadiusz.gladki@contractors.roche.com>
Date: 2024-04-23 12:57:25 +0200
Commit message:
Commit: bdc73d99e5fcf3b61108ef1baac184b9698a8a39
Author: Arkadiusz Gladki <arkadiusz.gladki@contractors.roche.com>
Date: 2024-04-23 12:57:25 +0200
Commit message:
feat: change file links from igv-data.systemsbiology.net to gladki.pl/igvr
Package: igvShiny
Commit: a969950157ed2969c5e3a104e0cb790d7a6c14a3
Author: Arek Gladki <41166437+gladkia@users.noreply.github.com>
Date: 2024-03-17 12:51:25 +0100
Commit message:
Commit: a969950157ed2969c5e3a104e0cb790d7a6c14a3
Author: Arek Gladki <41166437+gladkia@users.noreply.github.com>
Date: 2024-03-17 12:51:25 +0100
Commit message:
Merge pull request #74 from karollayna/add_shinytest2_demo_GFF3 Add shinytest2 for igvShinyDemo-GFF3
Package: igvShiny
Commit: c62695f0f97791daa52a370a5a70ebcef046a4c3
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-17 09:58:45 +0100
Commit message:
Commit: c62695f0f97791daa52a370a5a70ebcef046a4c3
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-17 09:58:45 +0100
Commit message:
fixed problem with shinytest2 for igvShinyDemo-GFF3
Package: igvShiny
Commit: e84f7bed733fe94ad8971f3fb98f727f766c06d9
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 22:27:39 +0100
Commit message:
Commit: e84f7bed733fe94ad8971f3fb98f727f766c06d9
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 22:27:39 +0100
Commit message:
updated shinytest2 for igvShinyDemo-GFF3
Package: igvShiny
Commit: 4d5474468f1a1e19985b0a994107085dea5ae7d0
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 22:10:05 +0100
Commit message:
Commit: 4d5474468f1a1e19985b0a994107085dea5ae7d0
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 22:10:05 +0100
Commit message:
changed parameter in shinytest2 for igvShinyDemo-GFF3
Package: igvShiny
Commit: e5a4025f0d87e9ee66abf083dc7050ae97886e78
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 21:29:59 +0100
Commit message:
Commit: e5a4025f0d87e9ee66abf083dc7050ae97886e78
Author: Karolina Scigocka <scigockakarolina@gmail.com>
Date: 2024-03-16 21:29:59 +0100
Commit message:
added shinytest2 for igvShinyDemo-GFF3 bumped version updated documentation
Package: MAPFX
Commit: 21f5b11703578f41e88477b9b0a04abbc92d587f
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 21:21:54 +1000
Commit message:
Commit: 21f5b11703578f41e88477b9b0a04abbc92d587f
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 21:21:54 +1000
Commit message:
version 0.99.4-for3ndReview-example2cores
Package: MatrixQCvis
Commit: e7104adbf3bbef2741e515f30d257db34a1576ed
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:18:08 +0200
Commit message:
Commit: e7104adbf3bbef2741e515f30d257db34a1576ed
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:18:08 +0200
Commit message:
bump to version 1.11.6
Package: MatrixQCvis
Commit: d183190d7a136fa668bf5489ee2b929812a05034
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:16:49 +0200
Commit message:
Commit: d183190d7a136fa668bf5489ee2b929812a05034
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:16:49 +0200
Commit message:
add dplyr:: in front of right_join in vignette
Package: MatrixQCvis
Commit: 62fc560782ed570d6c7db46d206b62144067cf04
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:16:28 +0200
Commit message:
Commit: 62fc560782ed570d6c7db46d206b62144067cf04
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:16:28 +0200
Commit message:
refactor Rd files
Package: MatrixQCvis
Commit: 07b44fceb4bd7ece2d27f4a2aa806b17a08dc96c
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:15:52 +0200
Commit message:
Commit: 07b44fceb4bd7ece2d27f4a2aa806b17a08dc96c
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-23 13:15:52 +0200
Commit message:
add ... argument to pass to assay for fct updateSE
Package: MatrixQCvis
Commit: 041f9f0e4eaae8483166daf0a4cb83595814b174
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-12 15:32:29 +0200
Commit message:
Commit: 041f9f0e4eaae8483166daf0a4cb83595814b174
Author: Thomas Naake <thomasnaake@gmx.de>
Date: 2024-04-12 15:32:29 +0200
Commit message:
set na.rm = TRUE in median() for normalizeAssay to avoid NA normFactors
Package: limma
Commit: dbf9c6601da3a5dfa359630ca2cc945714d254eb
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 21:07:41 +1000
Commit message:
Commit: dbf9c6601da3a5dfa359630ca2cc945714d254eb
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 21:07:41 +1000
Commit message:
Code formatting: voom() arguments over multiple lines.
Package: splatter
Commit: ff532752f7f8703e77234ea08f7039c954cc0ecf
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:54:34 +0200
Commit message:
Commit: ff532752f7f8703e77234ea08f7039c954cc0ecf
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:54:34 +0200
Commit message:
Update NEWS for Bioconductor 3.19 release
Package: splatter
Commit: c2fe234e176464cfd58497975bf1c60bfd3bce21
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:48:59 +0200
Commit message:
Commit: c2fe234e176464cfd58497975bf1c60bfd3bce21
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:48:59 +0200
Commit message:
Set \dontrun for addGeneLengths example Avoid depending on annotation packages
Package: limma
Commit: 87d269e501ac7c0d8448d25b89ff9d7ca06f7577
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 20:53:25 +1000
Commit message:
Commit: 87d269e501ac7c0d8448d25b89ff9d7ca06f7577
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2024-04-23 20:53:25 +1000
Commit message:
limma 3.59.10 - Update test output for corrected Bioc 3.19 organism packages.
Package: zellkonverter
Commit: 21fd89b442ee60ef8ddb843c661d4236100327d2
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:27:43 +0200
Commit message:
Commit: 21fd89b442ee60ef8ddb843c661d4236100327d2
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-04-23 12:27:43 +0200
Commit message:
Prepare NEWS for Bioconductor 3.19 release
Package: zellkonverter
Commit: 0454711b673bad066f96a9f49f134c29d7b9d970
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-03-26 09:38:55 +0100
Commit message:
Commit: 0454711b673bad066f96a9f49f134c29d7b9d970
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2024-03-26 09:38:55 +0100
Commit message:
Set git credentials after checkout for pkgdown
Package: podkat
Commit: dd257b163d997e6622b07a215cc02bdac05344c2
Author: UBod <ulrich@bodenhofer.com>
Date: 2024-04-23 12:09:59 +0200
Commit message:
Commit: dd257b163d997e6622b07a215cc02bdac05344c2
Author: UBod <ulrich@bodenhofer.com>
Date: 2024-04-23 12:09:59 +0200
Commit message:
Change of maintainer e-mail address and website; change of format of vignette; version number bumped to 1.35.1
Package: DOSE
Commit: 375406900bcad4374b09884cef67268cd48ce5eb
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2024-04-23 18:06:56 +0800
Commit message:
Commit: 375406900bcad4374b09884cef67268cd48ce5eb
Author: Guangchuang Yu <guangchuangyu@gmail.com>
Date: 2024-04-23 18:06:56 +0800
Commit message:
update docs
Package: miloR
Commit: 69fd5cd800acdf43d96c126a51607221dd5e72fc
Author: MikeDMorgan <michael.morgan@abdn.ac.uk>
Date: 2024-04-23 11:04:06 +0100
Commit message:
Commit: 69fd5cd800acdf43d96c126a51607221dd5e72fc
Author: MikeDMorgan <michael.morgan@abdn.ac.uk>
Date: 2024-04-23 11:04:06 +0100
Commit message:
downsample vignette data for speed up
Package: MAPFX
Commit: 2445c9c17622723ad32f52590e5e089d5b822a87
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 19:50:15 +1000
Commit message:
Commit: 2445c9c17622723ad32f52590e5e089d5b822a87
Author: Hsiao-Chi Liao <118640075+HsiaoChiLiao@users.noreply.github.com>
Date: 2024-04-23 19:50:15 +1000
Commit message:
version 0.99.3-for3ndReview
Package: msqrob2
Commit: 48b521994b65ec9403784a187202c222b67175a8
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-04-23 09:39:40 +0200
Commit message:
Commit: 48b521994b65ec9403784a187202c222b67175a8
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-04-23 09:39:40 +0200
Commit message:
solve conflict
Package: msqrob2
Commit: 6c2f36ad973e77afd2e53e02a78f4c554c466e8c
Author: StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com>
Date: 2024-04-22 10:57:22 +0200
Commit message:
Commit: 6c2f36ad973e77afd2e53e02a78f4c554c466e8c
Author: StijnVandenbulcke <57996469+StijnVandenbulcke@users.noreply.github.com>
Date: 2024-04-22 10:57:22 +0200
Commit message:
Merge pull request #55 from StijnVandenbulcke/master Newest bioconductor release