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BUILD report for proteomics on malbec1

This page was generated on 2021-01-15 15:45:13 -0500 (Fri, 15 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE proteomics PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 18/28HostnameOS / ArchINSTALLBUILD
proteomics 1.14.0
Laurent Gatto
Snapshot Date: 2021-01-15 09:00:03 -0500 (Fri, 15 Jan 2021)
URL: https://git.bioconductor.org/packages/proteomics
Branch: RELEASE_3_12
Last Commit: 01d9331
Last Changed Date: 2020-10-27 09:41:18 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK [ ERROR ]
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK 

Summary

Package: proteomics
Version: 1.14.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data proteomics
StartedAt: 2021-01-15 09:25:28 -0500 (Fri, 15 Jan 2021)
EndedAt: 2021-01-15 09:27:43 -0500 (Fri, 15 Jan 2021)
EllapsedTime: 134.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data proteomics
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* checking for file ‘proteomics/DESCRIPTION’ ... OK
* preparing ‘proteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘proteomics.Rmd’ using rmarkdown
Bioconductor version 3.12 (BiocManager 1.30.10), ?BiocManager::install for help
Warning: replacing previous import 'MSnbase::plot' by 'graphics::plot' when loading 'RforProteomics'

This is the 'RforProteomics' version 1.28.0.

  To get started, visit
    http://lgatto.github.com/RforProteomics/

  or, in R, open package vignettes by typing
    RforProteomics() # R/Bioc for proteomics overview
    RProtVis()       # R/Bioc for proteomics visualisation

  For a full list of available documents:
    vignette(package='RforProteomics')



Attaching package: 'RforProteomics'

The following object is masked from 'package:stats':

    spectrum

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CopyNumberVariants
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GeneticsCellBiology
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trying URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML'
Content type 'unknown' length 450032788 bytes (429.2 MB)
===
Quitting from lines 192-195 (proteomics.Rmd) 
Error: processing vignette 'proteomics.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML'
--- failed re-building ‘proteomics.Rmd’

SUMMARY: processing the following file failed:
  ‘proteomics.Rmd’

Error: Vignette re-building failed.
Execution halted