Back to Workflows build report for BioC 3.18

This page was generated on 2024-03-01 14:00:10 -0500 (Fri, 01 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4692
palomino4Windows Server 2022 Datacenterx644.3.2 (2023-10-31 ucrt) -- "Eye Holes" 4445
lconwaymacOS 12.7.1 Montereyx86_644.3.2 Patched (2023-11-01 r85457) -- "Eye Holes" 4466
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 20/30HostnameOS / ArchINSTALLBUILD
RNAseq123 1.26.0  (landing page)
Matthew Ritchie
Snapshot Date: 2024-03-01 10:45:01 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/RNAseq123
git_branch: RELEASE_3_18
git_last_commit: 40f3611
git_last_commit_date: 2023-10-24 08:46:58 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  

BUILD results for RNAseq123 on lconway


To the developers/maintainers of the RNAseq123 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RNAseq123
Version: 1.26.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseq123
StartedAt: 2024-03-01 11:02:42 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 11:02:56 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAseq123
###
##############################################################################
##############################################################################


* checking for file ‘RNAseq123/DESCRIPTION’ ... OK
* preparing ‘RNAseq123’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘RNAseq123’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘RNAseq123’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘BiocWorkflowTools’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so, 0x0006): Library not loaded: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib'
  Referenced from: '/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/git2r/libs/git2r.so'
  Reason: tried: '/usr/local/opt/libgit2/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file), '/usr/local/Cellar/libgit2/1.7.1/lib/libgit2.1.4.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgit2.1.4.dylib' (no such file), '/usr/local/jdk-18.jdk/Contents/Home/lib/server/libgit2.1.4.dylib' (no such file)
Error : package ‘BiocWorkflowTools’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpUR1p9a/Rinst125eb76b5d0df/RNAseq123’
      -----------------------------------
ERROR: package installation failed