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CHECK report for optimalFlowData on malbec1

This page was generated on 2021-01-14 14:10:26 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE optimalFlowData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 261/398HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.2.0
Hristo Inouzhe
Snapshot Date: 2021-01-14 09:00:17 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/optimalFlowData
Branch: RELEASE_3_12
Last Commit: 930e8b9
Last Changed Date: 2020-10-27 10:31:47 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 

Summary

Package: optimalFlowData
Version: 1.2.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz
StartedAt: 2021-01-14 12:48:43 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 12:49:38 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 54.5 seconds
RetCode: 0
Status:  OK 
CheckDir: optimalFlowData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL optimalFlowData
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0480.0040.053
Cytometry100.0440.0040.046
Cytometry110.0440.0000.046
Cytometry120.0440.0040.047
Cytometry130.0280.0160.045
Cytometry140.0560.0080.062
Cytometry150.0160.0040.022
Cytometry160.0160.0040.022
Cytometry170.0960.0080.103
Cytometry180.0720.0120.082
Cytometry190.0360.0040.040
Cytometry20.0680.0080.076
Cytometry200.0840.0000.085
Cytometry210.1160.0040.121
Cytometry220.0600.0000.059
Cytometry230.0400.0040.045
Cytometry240.040.000.04
Cytometry250.0360.0000.037
Cytometry260.0360.0000.038
Cytometry270.1160.0200.136
Cytometry280.1040.0280.132
Cytometry290.0880.0040.092
Cytometry30.0160.0000.017
Cytometry300.0800.0000.078
Cytometry310.0960.0040.102
Cytometry320.0800.0040.086
Cytometry330.0400.0000.042
Cytometry340.1200.0120.133
Cytometry350.0680.0000.071
Cytometry360.0160.0040.021
Cytometry370.0160.0000.018
Cytometry380.0200.0000.019
Cytometry390.0120.0040.020
Cytometry40.0120.0040.020
Cytometry400.0440.0000.048
Cytometry50.0160.0040.020
Cytometry60.0160.0000.017
Cytometry70.0160.0000.017
Cytometry80.0160.0040.019
Cytometry90.0320.0000.033
buildDatabase0.6240.0320.656
cytometry.diagnosis0.0040.0000.002
noise.types0.0000.0000.001