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This page was generated on 2024-03-28 14:52:06 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 246/429HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.40.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2024-03-28 07:30:02 -0400 (Thu, 28 Mar 2024)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: RELEASE_3_18
git_last_commit: f29b740
git_last_commit_date: 2023-10-24 08:58:15 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

CHECK results for miRNATarget on nebbiolo2


To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.40.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings miRNATarget_1.40.0.tar.gz
StartedAt: 2024-03-28 11:49:07 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 11:50:28 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 81.1 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings miRNATarget_1.40.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.40.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘miRNATarget.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0580.0000.058
HS_refseq_to_affy_hc_g1100.0040.0000.004
HS_refseq_to_affy_hg_focus0.0130.0040.016
HS_refseq_to_affy_hg_u133_plus_20.0550.0040.059
HS_refseq_to_affy_hg_u133a0.0320.0030.036
HS_refseq_to_affy_hg_u133a_20.0360.0000.036
HS_refseq_to_affy_hg_u133b0.0170.0000.018
HS_refseq_to_affy_hg_u95a0.0220.0000.023
HS_refseq_to_affy_hg_u95av20.0210.0000.021
HS_refseq_to_affy_hg_u95b0.0100.0040.014
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d0.0060.0000.006
HS_refseq_to_affy_hg_u95e0.0070.0040.010
HS_refseq_to_affy_huex_1_0_st_v20.9100.0190.930
HS_refseq_to_affy_hugene_1_0_st_v10.0500.0010.050
HS_refseq_to_affy_hugenefl0.0130.0000.014
HS_refseq_to_affy_u133_x3p0.0660.0040.071
HS_refseq_to_agilent_cgh_44b0.0140.0000.014
HS_refseq_to_agilent_wholegenome0.0720.0000.072
HS_refseq_to_canonical_transcript_stable_id0.0650.0030.069
HS_refseq_to_ccds0.0300.0080.038
HS_refseq_to_codelink0.0400.0000.039
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
HS_refseq_to_embl0.7320.0160.749
HS_refseq_to_ensembl_exon_id0.0010.0000.002
HS_refseq_to_ensembl_gene_id0.0450.0030.049
HS_refseq_to_ensembl_peptide_id0.0420.0000.041
HS_refseq_to_ensembl_transcript_id0.0550.0000.054
HS_refseq_to_entrezgene0.0430.0040.046
HS_refseq_to_hgnc_id0.1600.0040.164
HS_refseq_to_hgnc_symbol0.0420.0000.042
HS_refseq_to_hgnc_transcript_name0.0430.0040.046
HS_refseq_to_illumina_humanht_120.0480.0000.048
HS_refseq_to_illumina_humanwg_6_v10.0380.0040.042
HS_refseq_to_illumina_humanwg_6_v20.0360.0000.035
HS_refseq_to_illumina_humanwg_6_v30.0420.0000.042
HS_refseq_to_interpro0.1150.0000.114
HS_refseq_to_ipi0.1070.0000.107
HS_refseq_to_merops0.0040.0000.004
HS_refseq_to_pdb0.0820.0040.086
HS_refseq_to_pfam0.0660.0000.066
HS_refseq_to_phalanx_onearray0.0370.0030.041
HS_refseq_to_protein_id1.0720.0161.089
HS_refseq_to_refseq_dna0.0500.0030.054
HS_refseq_to_refseq_genomic0.0010.0010.001
HS_refseq_to_refseq_peptide0.0890.0000.090
HS_refseq_to_rfam0.0000.0020.002
HS_refseq_to_rfam_gene_name0.0000.0010.001
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.0340.0010.033
HS_refseq_to_tigrfam0.0050.0000.005
HS_refseq_to_ucsc0.0420.0040.045
HS_refseq_to_unigene0.0550.0030.058
HS_refseq_to_uniprot_genename0.040.000.04
HS_refseq_to_uniprot_genename_transcript_name0.0010.0000.002
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0010.0000.001
HS_refseq_to_wikigene_id0.0010.0000.001
HS_refseq_to_wikigene_name0.0440.0000.043
MM_conv_id0.0020.0000.002
MM_refseq_to_affy_mg_u74a0.0150.0000.015
MM_refseq_to_affy_mg_u74av20.0130.0000.013
MM_refseq_to_affy_mg_u74b0.0110.0000.011
MM_refseq_to_affy_mg_u74bv20.0070.0040.012
MM_refseq_to_affy_mg_u74c0.0000.0040.004
MM_refseq_to_affy_mg_u74cv20.0050.0000.005
MM_refseq_to_affy_moe430a0.0300.0000.029
MM_refseq_to_affy_moe430b0.0100.0040.014
MM_refseq_to_affy_moex_1_0_st_v10.3620.0040.366
MM_refseq_to_affy_mogene_1_0_st_v10.0360.0000.037
MM_refseq_to_affy_mouse430_20.0410.0000.041
MM_refseq_to_affy_mouse430a_20.0280.0000.028
MM_refseq_to_affy_mu11ksuba0.0100.0000.009
MM_refseq_to_affy_mu11ksubb0.0070.0000.007
MM_refseq_to_agilent_wholegenome0.0560.0000.056
MM_refseq_to_canonical_transcript_stable_id0.0540.0000.055
MM_refseq_to_ccds0.0280.0000.028
MM_refseq_to_codelink0.0260.0030.030
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0010.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2810.0080.289
MM_refseq_to_ensembl_exon_id0.0000.0010.001
MM_refseq_to_ensembl_gene_id0.1490.0030.150
MM_refseq_to_ensembl_peptide_id0.0320.0000.032
MM_refseq_to_ensembl_transcript_id0.0360.0000.035
MM_refseq_to_entrezgene0.0320.0000.032
MM_refseq_to_fantom0.0930.0000.093
MM_refseq_to_illumina_mousewg_6_v10.0410.0030.046
MM_refseq_to_illumina_mousewg_6_v20.0460.0000.046
MM_refseq_to_interpro0.0980.0000.098
MM_refseq_to_ipi0.0010.0000.001
MM_refseq_to_merops0.0000.0030.004
MM_refseq_to_mgi_id0.0300.0050.035
MM_refseq_to_mgi_symbol0.0350.0000.036
MM_refseq_to_mgi_transcript_name0.0380.0000.038
MM_refseq_to_pdb0.010.000.01
MM_refseq_to_pfam0.0510.0040.055
MM_refseq_to_phalanx_onearray0.0330.0000.033
MM_refseq_to_protein_id0.2670.0000.267
MM_refseq_to_refseq_dna0.0410.0040.045
MM_refseq_to_refseq_peptide0.0720.0030.076
MM_refseq_to_rfam0.0020.0010.002
MM_refseq_to_rfam_gene_name0.0010.0000.002
MM_refseq_to_rfam_transcript_name0.0000.0000.001
MM_refseq_to_smart0.0290.0000.029
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0360.0030.041
MM_refseq_to_unigene0.0440.0040.048
MM_refseq_to_uniprot_genename0.0340.0000.034
MM_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.002
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0310.0000.032
TBL21.2710.1231.396
TBL2_HS1.4930.1691.661
TBL2_MM0.8350.0830.919
conv_id0.0020.0000.002
id_conv0.0290.0000.028