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CHECK report for geneLenDataBase on nebbiolo1

This page was generated on 2021-01-14 14:10:32 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE geneLenDataBase PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 141/398HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.26.0
Matthew Young , Nadia Davidson
Snapshot Date: 2021-01-14 09:00:17 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_12
Last Commit: 2724715
Last Changed Date: 2020-10-27 09:51:48 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]

Summary

Package: geneLenDataBase
Version: 1.26.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings geneLenDataBase_1.26.0.tar.gz
StartedAt: 2021-01-14 10:57:46 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:04:57 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 430.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings geneLenDataBase_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 99.9Mb
  sub-directories of 1Mb or more:
    data  99.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0630.0110.076
anoCar1.genscan.LENGTH0.0400.0080.047
anoCar1.xenoRefGene.LENGTH0.6040.0080.612
anoGam1.ensGene.LENGTH0.0480.0000.048
anoGam1.geneid.LENGTH0.0350.0000.035
anoGam1.genscan.LENGTH0.0290.0030.033
apiMel1.genscan.LENGTH0.0260.0030.030
apiMel2.ensGene.LENGTH0.0670.0040.072
apiMel2.geneid.LENGTH0.0930.0040.096
apiMel2.genscan.LENGTH0.0250.0000.025
aplCal1.xenoRefGene.LENGTH0.3140.0000.314
bosTau2.geneSymbol.LENGTH0.0330.0030.038
bosTau2.geneid.LENGTH0.2210.0160.238
bosTau2.genscan.LENGTH0.0630.0000.063
bosTau2.refGene.LENGTH0.0270.0040.031
bosTau2.sgpGene.LENGTH0.0750.0040.080
bosTau3.ensGene.LENGTH0.0770.0040.082
bosTau3.geneSymbol.LENGTH0.0270.0000.027
bosTau3.geneid.LENGTH0.0890.0010.090
bosTau3.genscan.LENGTH0.0540.0020.056
bosTau3.refGene.LENGTH0.0260.0000.026
bosTau3.sgpGene.LENGTH0.0670.0030.071
bosTau4.ensGene.LENGTH0.0770.0000.077
bosTau4.geneSymbol.LENGTH0.0260.0000.026
bosTau4.genscan.LENGTH0.0490.0030.054
bosTau4.nscanGene.LENGTH0.0230.0000.024
bosTau4.refGene.LENGTH0.0250.0000.026
braFlo1.xenoRefGene.LENGTH0.3180.0040.322
caeJap1.xenoRefGene.LENGTH0.2980.0010.299
caePb1.xenoRefGene.LENGTH0.4550.0030.460
caePb2.xenoRefGene.LENGTH0.3180.0040.323
caeRem2.xenoRefGene.LENGTH0.2860.0070.294
caeRem3.xenoRefGene.LENGTH0.2720.0120.284
calJac1.genscan.LENGTH0.0680.0040.072
calJac1.nscanGene.LENGTH0.0870.0000.087
calJac1.xenoRefGene.LENGTH0.5370.0020.538
canFam1.ensGene.LENGTH0.0820.0020.084
canFam1.geneSymbol.LENGTH0.0050.0000.004
canFam1.genscan.LENGTH0.0470.0040.051
canFam1.nscanGene.LENGTH0.0510.0000.051
canFam1.refGene.LENGTH0.0050.0000.004
canFam1.xenoRefGene.LENGTH1.0970.1361.233
canFam2.ensGene.LENGTH0.0760.0000.076
canFam2.geneSymbol.LENGTH0.0040.0000.004
canFam2.genscan.LENGTH0.0480.0010.048
canFam2.nscanGene.LENGTH0.0490.0040.053
canFam2.refGene.LENGTH0.0050.0000.005
canFam2.xenoRefGene.LENGTH0.4980.0000.498
cavPor3.ensGene.LENGTH0.0710.0050.075
cavPor3.genscan.LENGTH0.0780.0020.081
cavPor3.nscanGene.LENGTH0.0530.0000.053
cavPor3.xenoRefGene.LENGTH0.4760.0000.476
cb1.xenoRefGene.LENGTH0.3510.0040.355
cb3.xenoRefGene.LENGTH0.2900.0000.289
ce2.geneSymbol.LENGTH0.0580.0000.058
ce2.geneid.LENGTH0.050.000.05
ce2.refGene.LENGTH0.0540.0000.054
ce4.geneSymbol.LENGTH0.0530.0000.053
ce4.refGene.LENGTH0.0480.0000.048
ce4.xenoRefGene.LENGTH0.070.000.07
ce6.ensGene.LENGTH0.0700.0030.074
ce6.geneSymbol.LENGTH0.0530.0010.054
ce6.refGene.LENGTH0.0470.0020.050
ce6.xenoRefGene.LENGTH0.0670.0000.068
ci1.geneSymbol.LENGTH0.0040.0010.004
ci1.refGene.LENGTH0.0010.0020.004
ci1.xenoRefGene.LENGTH0.1380.0000.139
ci2.ensGene.LENGTH0.0510.0040.055
ci2.geneSymbol.LENGTH0.0030.0010.004
ci2.refGene.LENGTH0.0020.0020.004
ci2.xenoRefGene.LENGTH0.2280.0000.228
danRer3.ensGene.LENGTH0.0880.0000.088
danRer3.geneSymbol.LENGTH0.0460.0000.047
danRer3.refGene.LENGTH0.0410.0000.042
danRer4.ensGene.LENGTH0.0870.0050.092
danRer4.geneSymbol.LENGTH0.0440.0020.046
danRer4.genscan.LENGTH0.0470.0040.050
danRer4.nscanGene.LENGTH0.0700.0080.079
danRer4.refGene.LENGTH0.0400.0000.041
danRer5.ensGene.LENGTH0.0910.0000.091
danRer5.geneSymbol.LENGTH0.0430.0000.043
danRer5.refGene.LENGTH0.0360.0000.036
danRer5.vegaGene.LENGTH0.040.000.04
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.0890.0000.090
danRer6.geneSymbol.LENGTH0.0450.0000.045
danRer6.refGene.LENGTH0.0360.0020.037
danRer6.xenoRefGene.LENGTH0.5160.0020.518
dm1.geneSymbol.LENGTH0.0540.0000.055
dm1.genscan.LENGTH0.0970.0040.102
dm1.refGene.LENGTH0.0460.0010.047
dm2.geneSymbol.LENGTH0.0480.0030.051
dm2.geneid.LENGTH0.0250.0020.027
dm2.genscan.LENGTH0.0200.0000.019
dm2.nscanGene.LENGTH0.0340.0040.038
dm2.refGene.LENGTH0.0460.0000.046
dm3.geneSymbol.LENGTH0.0570.0010.058
dm3.nscanPasaGene.LENGTH0.0390.0000.040
dm3.refGene.LENGTH0.0520.0000.052
dp2.genscan.LENGTH0.0220.0030.026
dp2.xenoRefGene.LENGTH0.1460.0050.150
dp3.geneid.LENGTH0.0310.0000.030
dp3.genscan.LENGTH0.0210.0000.020
dp3.xenoRefGene.LENGTH0.0850.0000.086
droAna1.geneid.LENGTH0.0520.0010.053
droAna1.genscan.LENGTH0.0150.0020.017
droAna1.xenoRefGene.LENGTH0.1510.0010.150
droAna2.genscan.LENGTH0.0380.0000.038
droAna2.xenoRefGene.LENGTH0.1950.0040.199
droEre1.genscan.LENGTH0.0190.0040.023
droEre1.xenoRefGene.LENGTH0.1920.0000.192
droGri1.genscan.LENGTH0.030.000.03
droGri1.xenoRefGene.LENGTH0.2050.0000.206
droMoj1.geneid.LENGTH0.0970.0000.097
droMoj1.genscan.LENGTH0.0430.0000.043
droMoj1.xenoRefGene.LENGTH0.1710.0000.171
droMoj2.genscan.LENGTH0.0310.0000.031
droMoj2.xenoRefGene.LENGTH0.2630.0000.264
droPer1.genscan.LENGTH0.0300.0000.031
droPer1.xenoRefGene.LENGTH0.1960.0000.197
droSec1.genscan.LENGTH0.0220.0000.022
droSec1.xenoRefGene.LENGTH0.1950.0040.199
droSim1.geneid.LENGTH0.030.000.03
droSim1.genscan.LENGTH0.0190.0000.019
droSim1.xenoRefGene.LENGTH0.1720.0000.172
droVir1.geneid.LENGTH0.0820.0000.083
droVir1.genscan.LENGTH0.0330.0000.033
droVir1.xenoRefGene.LENGTH0.1740.0040.177
droVir2.genscan.LENGTH0.0280.0000.028
droVir2.xenoRefGene.LENGTH0.1940.0040.198
droYak1.geneid.LENGTH0.0310.0040.034
droYak1.genscan.LENGTH0.0240.0000.024
droYak1.xenoRefGene.LENGTH0.1760.0000.176
droYak2.genscan.LENGTH0.0220.0000.023
droYak2.xenoRefGene.LENGTH0.1900.0080.199
equCab1.geneSymbol.LENGTH0.0050.0000.004
equCab1.geneid.LENGTH0.0700.0040.073
equCab1.nscanGene.LENGTH0.0340.0000.035
equCab1.refGene.LENGTH0.0000.0040.005
equCab1.sgpGene.LENGTH0.0530.0000.054
equCab2.ensGene.LENGTH0.1760.0000.176
equCab2.geneSymbol.LENGTH0.0050.0000.005
equCab2.nscanGene.LENGTH0.0430.0000.043
equCab2.refGene.LENGTH0.0070.0000.006
equCab2.xenoRefGene.LENGTH0.4200.0000.421
felCat3.ensGene.LENGTH0.0810.0000.082
felCat3.geneSymbol.LENGTH0.0000.0030.004
felCat3.geneid.LENGTH0.4100.0080.418
felCat3.genscan.LENGTH0.3660.0080.374
felCat3.nscanGene.LENGTH0.0730.0000.073
felCat3.refGene.LENGTH0.0040.0000.003
felCat3.sgpGene.LENGTH0.1220.0000.122
felCat3.xenoRefGene.LENGTH0.8320.0080.840
fr1.ensGene.LENGTH0.0580.0040.062
fr1.genscan.LENGTH0.0480.0000.048
fr2.ensGene.LENGTH0.1060.0040.111
galGal2.ensGene.LENGTH0.0440.0040.049
galGal2.geneSymbol.LENGTH0.0140.0000.014
galGal2.geneid.LENGTH0.0340.0000.035
galGal2.genscan.LENGTH0.0510.0000.051
galGal2.refGene.LENGTH0.0110.0040.016
galGal2.sgpGene.LENGTH0.0440.0000.045
galGal3.ensGene.LENGTH0.0720.0000.074
galGal3.geneSymbol.LENGTH0.0150.0000.015
galGal3.genscan.LENGTH0.0470.0000.047
galGal3.nscanGene.LENGTH0.0630.0000.064
galGal3.refGene.LENGTH0.0120.0000.013
galGal3.xenoRefGene.LENGTH0.3710.0050.377
gasAcu1.ensGene.LENGTH0.0720.0030.074
gasAcu1.nscanGene.LENGTH0.0820.0000.082
hg16.acembly.LENGTH0.4770.0000.478
hg16.ensGene.LENGTH0.0580.0000.058
hg16.exoniphy.LENGTH0.2000.0000.201
hg16.geneSymbol.LENGTH0.0860.0000.087
hg16.geneid.LENGTH0.0420.0000.042
hg16.genscan.LENGTH0.0550.0000.055
hg16.knownGene.LENGTH0.1000.0000.101
hg16.refGene.LENGTH0.0800.0010.081
hg16.sgpGene.LENGTH0.0450.0030.048
hg17.acembly.LENGTH0.7950.0120.807
hg17.acescan.LENGTH0.0090.0000.008
hg17.ccdsGene.LENGTH0.0180.0000.018
hg17.ensGene.LENGTH0.0830.0000.086
hg17.exoniphy.LENGTH1.1550.0081.164
hg17.geneSymbol.LENGTH0.0710.0040.073
hg17.geneid.LENGTH0.0520.0000.053
hg17.genscan.LENGTH0.0430.0000.044
hg17.knownGene.LENGTH0.0760.0040.081
hg17.refGene.LENGTH0.0710.0000.071
hg17.sgpGene.LENGTH0.0480.0040.052
hg17.vegaGene.LENGTH0.030.000.03
hg17.vegaPseudoGene.LENGTH0.0120.0010.013
hg17.xenoRefGene.LENGTH0.1420.0030.144
hg18.acembly.LENGTH0.3350.0000.335
hg18.acescan.LENGTH0.0080.0000.009
hg18.ccdsGene.LENGTH0.0280.0000.027
hg18.ensGene.LENGTH0.1710.0000.171
hg18.exoniphy.LENGTH0.3540.0040.358
hg18.geneSymbol.LENGTH0.0730.0000.073
hg18.geneid.LENGTH0.0550.0000.055
hg18.genscan.LENGTH0.0470.0000.047
hg18.knownGene.LENGTH0.1030.0120.115
hg18.knownGeneOld3.LENGTH0.0540.0000.054
hg18.refGene.LENGTH0.0690.0030.073
hg18.sgpGene.LENGTH0.0560.0040.060
hg18.sibGene.LENGTH0.2570.0000.257
hg18.xenoRefGene.LENGTH0.2610.0000.262
hg19.ccdsGene.LENGTH0.0340.0000.033
hg19.ensGene.LENGTH0.2230.0000.223
hg19.exoniphy.LENGTH0.3280.0040.332
hg19.geneSymbol.LENGTH0.0760.0040.081
hg19.knownGene.LENGTH0.1180.0080.126
hg19.nscanGene.LENGTH0.1140.0000.114
hg19.refGene.LENGTH0.0780.0000.078
hg19.xenoRefGene.LENGTH0.2680.0000.268
loxAfr3.xenoRefGene.LENGTH0.7810.0120.793
mm7.ensGene.LENGTH0.0860.0000.087
mm7.geneSymbol.LENGTH0.0690.0000.070
mm7.geneid.LENGTH0.0620.0000.062
mm7.genscan.LENGTH0.0460.0040.050
mm7.knownGene.LENGTH0.0720.0010.073
mm7.refGene.LENGTH0.0640.0020.066
mm7.sgpGene.LENGTH0.0560.0000.056
mm7.xenoRefGene.LENGTH0.2240.0080.232
mm8.ccdsGene.LENGTH0.0160.0030.019
mm8.ensGene.LENGTH0.0580.0040.062
mm8.geneSymbol.LENGTH0.0690.0000.070
mm8.geneid.LENGTH0.0570.0000.057
mm8.genscan.LENGTH0.0470.0000.048
mm8.knownGene.LENGTH0.0730.0000.073
mm8.nscanGene.LENGTH0.0520.0000.052
mm8.refGene.LENGTH0.0680.0000.067
mm8.sgpGene.LENGTH0.0590.0000.059
mm8.sibGene.LENGTH0.2060.0040.210
mm8.xenoRefGene.LENGTH0.2670.0050.272
mm9.acembly.LENGTH0.2520.0020.254
mm9.ccdsGene.LENGTH0.0250.0000.025
mm9.ensGene.LENGTH0.1200.0030.124
mm9.exoniphy.LENGTH0.3480.0000.348
mm9.geneSymbol.LENGTH0.0750.0040.079
mm9.geneid.LENGTH0.0600.0040.063
mm9.genscan.LENGTH0.050.000.05
mm9.knownGene.LENGTH0.0840.0000.086
mm9.nscanGene.LENGTH0.0480.0010.049
mm9.refGene.LENGTH0.0620.0060.068
mm9.sgpGene.LENGTH0.0660.0000.066
mm9.xenoRefGene.LENGTH0.4600.0040.464
monDom1.genscan.LENGTH0.0540.0000.054
monDom4.ensGene.LENGTH0.0550.0040.059
monDom4.geneSymbol.LENGTH0.0030.0000.003
monDom4.genscan.LENGTH0.0440.0000.044
monDom4.nscanGene.LENGTH0.0440.0000.044
monDom4.refGene.LENGTH0.0000.0030.003
monDom4.xenoRefGene.LENGTH0.2950.0000.296
monDom5.ensGene.LENGTH0.0830.0050.088
monDom5.geneSymbol.LENGTH0.0010.0020.003
monDom5.genscan.LENGTH0.0420.0030.046
monDom5.nscanGene.LENGTH0.0950.0000.096
monDom5.refGene.LENGTH0.0000.0030.003
monDom5.xenoRefGene.LENGTH0.4800.0040.485
ornAna1.ensGene.LENGTH0.0730.0070.081
ornAna1.geneSymbol.LENGTH0.0010.0010.002
ornAna1.refGene.LENGTH0.0000.0020.002
ornAna1.xenoRefGene.LENGTH0.4830.0080.490
oryLat2.ensGene.LENGTH0.0780.0000.078
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0040.0000.004
oryLat2.xenoRefGene.LENGTH0.4480.0080.456
panTro1.ensGene.LENGTH1.0890.0001.090
panTro1.geneid.LENGTH0.0360.0040.039
panTro1.genscan.LENGTH0.0460.0000.046
panTro1.xenoRefGene.LENGTH0.0860.0000.086
panTro2.ensGene.LENGTH0.0800.0090.089
panTro2.geneSymbol.LENGTH0.0740.0020.077
panTro2.genscan.LENGTH0.0460.0000.047
panTro2.nscanGene.LENGTH0.0460.0000.046
panTro2.refGene.LENGTH0.0730.0000.073
panTro2.xenoRefGene.LENGTH0.3520.0000.353
petMar1.xenoRefGene.LENGTH0.1930.0000.193
ponAbe2.ensGene.LENGTH0.0620.0000.062
ponAbe2.geneSymbol.LENGTH0.010.000.01
ponAbe2.genscan.LENGTH0.0410.0040.046
ponAbe2.nscanGene.LENGTH0.0440.0000.044
ponAbe2.refGene.LENGTH0.0050.0040.008
ponAbe2.xenoRefGene.LENGTH0.4430.0040.447
priPac1.xenoRefGene.LENGTH0.2630.0000.264
rheMac2.ensGene.LENGTH0.0890.0030.093
rheMac2.geneSymbol.LENGTH0.0040.0000.004
rheMac2.geneid.LENGTH0.0540.0040.059
rheMac2.nscanGene.LENGTH0.0490.0000.050
rheMac2.refGene.LENGTH0.0010.0040.005
rheMac2.sgpGene.LENGTH0.0570.0000.057
rheMac2.xenoRefGene.LENGTH0.3340.0000.335
rn3.ensGene.LENGTH0.0770.0000.078
rn3.geneSymbol.LENGTH0.0410.0000.040
rn3.geneid.LENGTH0.0410.0000.040
rn3.genscan.LENGTH0.0470.0000.047
rn3.knownGene.LENGTH0.0180.0000.018
rn3.nscanGene.LENGTH0.0420.0030.045
rn3.refGene.LENGTH0.0380.0000.038
rn3.sgpGene.LENGTH0.0430.0000.043
rn3.xenoRefGene.LENGTH0.3720.0000.372
rn4.ensGene.LENGTH0.0940.0000.094
rn4.geneSymbol.LENGTH0.040.000.04
rn4.geneid.LENGTH0.0660.0000.066
rn4.genscan.LENGTH0.0460.0000.047
rn4.knownGene.LENGTH0.0190.0000.019
rn4.nscanGene.LENGTH0.040.000.04
rn4.refGene.LENGTH0.0370.0000.037
rn4.sgpGene.LENGTH0.0620.0000.062
rn4.xenoRefGene.LENGTH0.2430.0000.244
sacCer1.ensGene.LENGTH0.0150.0000.015
sacCer2.ensGene.LENGTH0.0130.0000.014
strPur1.geneSymbol.LENGTH0.0030.0010.004
strPur1.genscan.LENGTH0.0480.0020.050
strPur1.refGene.LENGTH0.0000.0040.004
strPur1.xenoRefGene.LENGTH0.3340.0000.334
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.0740.0040.078
strPur2.refGene.LENGTH0.0030.0010.003
strPur2.xenoRefGene.LENGTH0.4440.0060.451
supportedGeneIDs0.0990.0164.273
supportedGenomes0.0960.0080.621
taeGut1.ensGene.LENGTH0.2010.0160.218
taeGut1.geneSymbol.LENGTH0.0020.0000.002
taeGut1.genscan.LENGTH0.0250.0000.025
taeGut1.nscanGene.LENGTH0.0190.0000.020
taeGut1.refGene.LENGTH0.0020.0000.003
taeGut1.xenoRefGene.LENGTH0.3570.0010.358
tetNig1.ensGene.LENGTH0.0690.0020.072
tetNig1.geneid.LENGTH0.0520.0000.053
tetNig1.genscan.LENGTH0.0420.0040.047
tetNig1.nscanGene.LENGTH0.0560.0000.055
tetNig2.ensGene.LENGTH0.0570.0000.057
unfactor0.0010.0050.006
xenTro1.genscan.LENGTH0.0630.0020.066
xenTro2.ensGene.LENGTH0.0620.0040.065
xenTro2.geneSymbol.LENGTH0.0240.0000.024
xenTro2.genscan.LENGTH0.0560.0000.057
xenTro2.refGene.LENGTH0.0190.0040.023