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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:chipseqDBData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings chipseqDBData_1.20.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/chipseqDBData.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘chipseqDBData/DESCRIPTION’ ... OK
* this is package ‘chipseqDBData’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘chipseqDBData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘AnnotationHub’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘chipseqDBData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: chipseqDB datasets
> ### Title: ChIP-seq DB datasets
> ### Aliases: H3K9acData CBPData H3K4me3Data H3K27me3Data NFYAData
> 
> ### ** Examples
> 
> H3K9acData()
Warning: Could not check database for updates.
  Database source currently unreachable.
  This should only be a temporary interruption. 
  Using previously cached version.
Error in value[[3L]](cond) : failed to connect
  reason: Timeout was reached: [bioconductor.org] SSL connection timeout
  Consider rerunning with 'localHub=TRUE'
Calls: H3K9acData ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘chipseqDBData.Rmd’ using rmarkdown

Quitting from lines 42-45 [unnamed-chunk-2] (chipseqDBData.Rmd)
Error: processing vignette 'chipseqDBData.Rmd' failed with diagnostics:
failed to connect
  reason: Timeout was reached: [bioconductor.org] SSL connection timeout
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘chipseqDBData.Rmd’

SUMMARY: processing the following file failed:
  ‘chipseqDBData.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/chipseqDBData.Rcheck/00check.log’
for details.