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CHECK report for breastCancerNKI on nebbiolo1

This page was generated on 2021-01-14 14:10:30 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE breastCancerNKI PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 36/398HostnameOS / ArchINSTALLBUILDCHECK
breastCancerNKI 1.28.0
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2021-01-14 09:00:17 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/breastCancerNKI
Branch: RELEASE_3_12
Last Commit: 3cc1834
Last Changed Date: 2020-10-27 09:52:43 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]

Summary

Package: breastCancerNKI
Version: 1.28.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:breastCancerNKI.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings breastCancerNKI_1.28.0.tar.gz
StartedAt: 2021-01-14 10:46:40 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 10:47:57 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: breastCancerNKI.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:breastCancerNKI.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings breastCancerNKI_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/breastCancerNKI.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘breastCancerNKI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘breastCancerNKI’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘breastCancerNKI’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 16.1Mb
  sub-directories of 1Mb or more:
    data  16.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  nki.rda   15.9Mb   10.8Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/breastCancerNKI.Rcheck/00check.log’
for details.



Installation output

breastCancerNKI.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL breastCancerNKI
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘breastCancerNKI’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (breastCancerNKI)

Tests output


Example timings

breastCancerNKI.Rcheck/breastCancerNKI-Ex.timings

nameusersystemelapsed
nki0.7680.0440.812