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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:FlowSorted.CordBloodCombined.450k.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings FlowSorted.CordBloodCombined.450k_1.20.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/FlowSorted.CordBloodCombined.450k.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘FlowSorted.CordBloodCombined.450k/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘FlowSorted.CordBloodCombined.450k’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FlowSorted.CordBloodCombined.450k’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘FlowSorted.CordBloodCombined.450k-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: libraryDataGet
> ### Title: libraryDataGet
> ### Aliases: libraryDataGet
> 
> ### ** Examples
> 
> FlowSorted.CordBloodCombined.450k<-
+ libraryDataGet('FlowSorted.CordBloodCombined.450k')
Warning: Could not check database for updates.
  Database source currently unreachable.
  This should only be a temporary interruption. 
  Using previously cached version.
Error in value[[3L]](cond) : failed to connect
  reason: Timeout was reached: [bioconductor.org] SSL connection timeout
  Consider rerunning with 'localHub=TRUE'
Calls: libraryDataGet ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `value[[3L]](cond)`: failed to connect
    reason: Timeout was reached: [bioconductor.org] SSL connection timeout
    Consider rerunning with 'localHub=TRUE'
  Backtrace:
      ▆
   1. └─ExperimentHub::ExperimentHub() at test.R:4:5
   2.   └─AnnotationHub::.Hub(...)
   3.     └─base::tryCatch(...)
   4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   6.           └─value[[3L]](cond)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘FlowSorted.CordBloodCombined.450k.Rmd’ using rmarkdown

Quitting from lines 55-60 [unnamed-chunk-1] (FlowSorted.CordBloodCombined.450k.Rmd)
Error: processing vignette 'FlowSorted.CordBloodCombined.450k.Rmd' failed with diagnostics:
failed to connect
  reason: Timeout was reached: [bioconductor.org] SSL connection timeout
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘FlowSorted.CordBloodCombined.450k.Rmd’

SUMMARY: processing the following file failed:
  ‘FlowSorted.CordBloodCombined.450k.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/FlowSorted.CordBloodCombined.450k.Rcheck/00check.log’
for details.