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This page was generated on 2024-03-28 14:52:05 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 128/429HostnameOS / ArchINSTALLBUILDCHECK
Fletcher2013b 1.38.0  (landing page)
Mauro Castro
Snapshot Date: 2024-03-28 07:30:02 -0400 (Thu, 28 Mar 2024)
git_url: https://git.bioconductor.org/packages/Fletcher2013b
git_branch: RELEASE_3_18
git_last_commit: 40748fb
git_last_commit_date: 2023-10-24 09:06:20 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for Fletcher2013b on nebbiolo2


To the developers/maintainers of the Fletcher2013b package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Fletcher2013b
Version: 1.38.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:Fletcher2013b.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings Fletcher2013b_1.38.0.tar.gz
StartedAt: 2024-03-28 11:27:20 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 11:31:15 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 235.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: Fletcher2013b.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:Fletcher2013b.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings Fletcher2013b_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/Fletcher2013b.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘Fletcher2013b/DESCRIPTION’ ... OK
* this is package ‘Fletcher2013b’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Fletcher2013b’ can be installed ... WARNING
Found the following significant warnings:
  Note: possible error in 'relax(rdp, p1 = 90, ps = TRUE)': unused argument (ps = TRUE) 
  Note: possible error in 'relax(rdp, 300, 50, 100, ': unused argument (ps = TRUE) 
See ‘/home/biocbuild/bbs-3.18-data-experiment/meat/Fletcher2013b.Rcheck/00install.out’ for details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
* checking installed package size ... NOTE
  installed size is 262.9Mb
  sub-directories of 1Mb or more:
    data  262.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Fletcher2013pipeline.consensusnet: possible error in relax(rdp, p1 =
  90, ps = TRUE): unused argument (ps = TRUE)
Fletcher2013pipeline.enrichmap: possible error in relax(rdp, 300, 50,
  100, ps = TRUE): unused argument (ps = TRUE)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘Fletcher2013b.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/Fletcher2013b.Rcheck/00check.log’
for details.



Installation output

Fletcher2013b.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL Fletcher2013b
###
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘Fletcher2013b’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'relax(rdp, p1 = 90, ps = TRUE)': unused argument (ps = TRUE) 
Note: possible error in 'relax(rdp, 300, 50, 100, ': unused argument (ps = TRUE) 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Fletcher2013b)

Tests output


Example timings

Fletcher2013b.Rcheck/Fletcher2013b-Ex.timings

nameusersystemelapsed
Fletcher2013b.pipelines000
miscellaneous0.3400.0120.352
rtni.data3.9330.2004.132
siRNA0.0070.0000.007