Back to Build/check report for BioC 3.18 experimental data
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-03-28 14:52:05 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 72/429HostnameOS / ArchINSTALLBUILDCHECK
CopyhelpeR 1.34.0  (landing page)
Oscar Krijgsman
Snapshot Date: 2024-03-28 07:30:02 -0400 (Thu, 28 Mar 2024)
git_url: https://git.bioconductor.org/packages/CopyhelpeR
git_branch: RELEASE_3_18
git_last_commit: 9857e4b
git_last_commit_date: 2023-10-24 09:10:16 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

BUILD results for CopyhelpeR on nebbiolo2


To the developers/maintainers of the CopyhelpeR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CopyhelpeR
Version: 1.34.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopyhelpeR
StartedAt: 2024-03-28 10:19:59 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 10:20:06 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 7.0 seconds
RetCode: 0
Status:   OK  
PackageFile: CopyhelpeR_1.34.0.tar.gz
PackageFileSize: 42.66 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopyhelpeR
###
##############################################################################
##############################################################################


* checking for file ‘CopyhelpeR/DESCRIPTION’ ... OK
* preparing ‘CopyhelpeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘CopyhelpeR/inst/extdata/hg18_1kb/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/hg18_1kb/blacklist.rda’
    ‘CopyhelpeR/inst/extdata/hg19_1kb/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/hg19_1kb/blacklist.rda’
    ‘CopyhelpeR/inst/extdata/hg38_1kb/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/hg38_1kb/blacklist.rda’
    ‘CopyhelpeR/inst/extdata/mm10_1kb/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/mm10_1kb/blacklist.rda’
    ‘CopyhelpeR/inst/extdata/mm10_1kb_4/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/mm10_1kb_4/blacklist.rda’
    ‘CopyhelpeR/inst/extdata/mm9_1kb/GC_mappability.rda’
    ‘CopyhelpeR/inst/extdata/mm9_1kb/blacklist.rda’
* building ‘CopyhelpeR_1.34.0.tar.gz’