############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:weitrix.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings weitrix_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/weitrix.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘weitrix/DESCRIPTION’ ... OK * this is package ‘weitrix’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘weitrix’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) weitrix_calibrate_trend.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_calibrate_trend.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_calibrate_trend.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_calibrate_trend.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:64-68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:69-73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:74-76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:77-80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_components.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_confects.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_confects.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_confects.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_confects.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_confects.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) weitrix_sd_confects.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed components_seq_scree 37.686 6.645 23.188 weitrix_calibrate_trend 10.916 4.250 8.310 weitrix_dispersions 10.653 4.237 8.131 weitrix_calplot 9.417 3.876 10.029 weitrix_calibrate 9.315 3.411 6.644 weitrix_components 3.572 1.622 2.862 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.19-bioc/meat/weitrix.Rcheck/00check.log’ for details.