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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:weaver.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings weaver_1.70.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/weaver.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘weaver/DESCRIPTION’ ... OK
* this is package ‘weaver’ version ‘1.70.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘weaver’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘codetools’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘codetools’ ‘digest’ ‘tools’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cache_expr: no visible binding for global variable ‘DEPS’
eval_and_cache: no visible global function definition for ‘sessionInfo’
findDeps: no visible global function definition for ‘findGlobals’
findDeps: no visible global function definition for ‘findLocals’
get_expr_hash: no visible global function definition for ‘digest’
make_cache_expr : <local> : <anonymous>: no visible binding for global
  variable ‘DEPS’
weaver: no visible binding for global variable ‘RweaveLatexWritedoc’
weaver: no visible binding for global variable ‘RweaveLatexOptions’
weaverLatexFinish: no visible global function definition for
  ‘RweaveLatexFinish’
weaverLatexSetup: no visible global function definition for
  ‘RweaveLatexSetup’
weaverLatexSetup: no visible global function definition for
  ‘RweaveLatexOptions’
Undefined global functions or variables:
  DEPS RweaveLatexFinish RweaveLatexOptions RweaveLatexSetup
  RweaveLatexWritedoc digest findGlobals findLocals sessionInfo
Consider adding
  importFrom("utils", "RweaveLatexFinish", "RweaveLatexOptions",
             "RweaveLatexSetup", "RweaveLatexWritedoc", "sessionInfo")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  inst/extdata/Makefile
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif, .NOTPARALLEL See section ‘Writing portable
packages’ in the ‘Writing R Extensions’ manual.
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/weaver.Rcheck/00check.log’
for details.